Job Description P39383 Confidence 98.19% Date Thu Jan 5 12:00:15 GMT 2012 Rank 83 Aligned Residues 151 % Identity 17% Template c3qbwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate Resolution 2.23 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																		.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T	E	N	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.									.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.									.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	V	L	N	I	G	G	.	F	S	N	V	S	L	L	R	.	.	.	.	.	.	.	.	.	.	G	F	D	C	G	P	G	N	V	L	M	D	A	W	I	H	H	Q	R	G	E	H	F	D	R	D	G	A	W	A	A	S	G	Q	V	N	H	A	L	L	A	S	L	L	A	D	E	F	F	A	A	R	G
Template Known Secondary structure								S	S	.									.	.	.	.	.	.	.	.	.	.							S	S												S		S	S		G	G	G					T	S												T	S							S
Template Predicted Secondary structure										.									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.
Predicted Secondary structure																						.	.																																																					.
Query SS confidence																						.	.																																																					.
Query Sequence		A	I	T	S	M	C	T	V	F	A	E	S	E	A	I	S	L	R	S	A	.	.	G	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A	R	L	S	C	E	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	.	R	M	P	V	N
Query Conservation																						.	.																																																					.
Alig confidence																						.	.																													.	.																							.
Template Conservation																																																				.	.
Template Sequence		P	K	S	T	G	R	E	R	F	N	L	P	W	L	Q	E	H	L	A	R	H	P	A	L	P	A	A	D	I	Q	A	T	L	L	E	L	S	A	R	S	I	S	E	S	L	L	D	A	Q	P	.	.	D	V	L	V	C	G	G	G	A	F	N	T	A	L	M	K	R	L	A	M	L	M	P	E	A	R	V	A
Template Known Secondary structure		S					T	T	T	S	S									T	S	S																														.	.						S	G	G	G	G													T	T	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		232	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		T	H	P	D	.	.	.	.	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q	R	V	R	T	R	R
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.
Template Conservation
Template Sequence		S	T	D	E	Y	G	I	P	P	A	W	M	E	G	M	A	F	A	W	L	A	H	R	F	L	E	R	L
Template Known Secondary structure			G	G	G	G	T	S		G	G	G															T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions