Job Description P39383 Confidence 99.93% Date Thu Jan 5 12:00:15 GMT 2012 Rank 5 Aligned Residues 251 % Identity 17% Template c3enoB_ PDB info PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 Resolution 3.02 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																				.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																																				.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		A	Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	D	G	V	I	T	R	R	F	L	V	P	T	P	F	R	.	.	.	.	.	P	A	T	A	.	.	.	.	.	.	.	.	.	.	.	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	F	L	T	L	T	G	Y	.	.	.
Query Conservation																																				.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																																				.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		M	I	V	L	G	L	E	G	T	A	H	T	I	S	C	G	I	I	D	E	S	R	I	L	A	M	E	S	S	M	Y	R	P	K	T	G	G	I	R	P	L	D	A	A	V	H	H	S	E	V	I	D	T	V	I	S	R	A	L	E	K	A	K	I	S	I	H	D	I	D	L	I	G	F	S	M	G	P	G	L
Template Known Secondary structure										S	S	S									S	S													T	T		S																										T			G	G	G									S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
															63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	Q	L	V	D	F	A	D	K	Q	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	.	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																												.																			.																	.	.
Template Conservation																																																													.																	.	.
Template Sequence		A	P	S	L	R	V	T	A	T	A	A	R	T	I	S	V	L	T	G	K	P	I	I	G	V	N	H	P	L	G	H	I	E	I	G	R	R	V	T	G	A	I	D	P	V	M	L	Y	V	S	G	G	N	T	Q	V	I	A	H	.	V	N	G	R	Y	R	V	L	G	E	T	L	D	I	G	I	.	.	G	N
Template Known Secondary structure																				T																					T		S	S							S	S	S								.		S	S	B							B	S	S				.	.
Template Predicted Secondary structure																																																													.																	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.													.	.
Query SS confidence																										.	.	.	.	.	.	.	.													.	.
Query Sequence		F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T	E	N	V	T	.	.	.	.	.	.	.	.	P	H	A	I	T	S	M	C	T	V	F	A	.	.	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A
Query Conservation																										.	.	.	.	.	.	.	.													.	.
Alig confidence																										.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		M	I	D	K	F	A	R	E	A	G	I	P	F	P	G	G	P	E	I	E	K	L	A	M	K	G	T	K	L	L	D	L	P	Y	S	V	K	G	M	D	T	A	F	S	G	I	L	T	A	A	L	Q	Y	L	K	T	G	Q	A	I	E	D	I	S	Y	S	I	Q	E	T	A	F	A	M	L	V	E	V	L	E
Template Known Secondary structure								T	T	T	T			S								T	T	S	T	T			S										T	T																	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		199	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure				.	.	.																											.	.	.									.	.	.
Query SS confidence				.	.	.																											.	.	.									.	.	.
Query Sequence		R	L	.	.	.	S	C	E	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	.	.	.	R	M	P	V	N	T	H	P	.	.	.	D	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q	R	V	R	T	R	R
Query Conservation				.	.	.																											.	.	.									.	.	.
Alig confidence				.	.	.																											.	.	.									.	.	.
Template Conservation
Template Sequence		R	A	L	Y	V	S	G	K	D	E	I	L	M	A	G	G	V	A	L	N	R	R	L	R	D	M	V	T	N	M	A	R	E	A	G	I	R	S	Y	L	T	D	R	E	Y	C	M	D	N	G	I	M	I	A	Q	A	A	L	L	M	Y	K	S	G	V	R
Template Known Secondary structure										S						S	S	G	G	G																T	S							T	T	T	T	S			S													T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions