Job Description P39383 Confidence 99.81% Date Thu Jan 5 12:00:15 GMT 2012 Rank 10 Aligned Residues 245 % Identity 22% Template c2v7yA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state Resolution 2.37 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.														.	.	.	.	.	.	30	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	R	R	F	L	V	P	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	K	I	I	G	I	D	L	G	T	T	N	S	C	V	A	V	L	E	G	G	E	V	K	V	I	P	N	P	E	G	N	R	T	T	P	S	V	V	A	F	K	N	G	E	R	L	V	G	E	V	A	K	R	Q	A	I	T	N	P	N	T	I	I	S	I	K	R	H	M	G	T	D	Y	K	V	E	I	E
Template Known Secondary structure												S	S									T	T								T	T	S		S	S								S	S	S	S				S					T	T	T	T	T		S	S					G	G	G	T	T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
					34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.													.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure		.	.	.																							.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																							.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	F	R	P	A	T	A	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	.	.	.	.	.	.	.	F	L	T	L	T	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	G	R	Q	L	V	D	F	A	D	K	Q	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	A	T
Query Conservation		.	.	.																							.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																							.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	Q	Y	T	P	Q	E	I	S	A	I	I	L	Q	Y	L	K	S	Y	A	E	D	Y	L	G	E	P	V	T	R	A	V	I	T	V	P	A	Y	F	N	D	A	Q	R	Q	A	T	K	D	A	G	R	I	A	G	L	E	V	E	R	I	I	N	E	P	T	A	A	A	L	A	Y	G	L	D	K	E	E	D
Template Known Secondary structure		T																									T	S											T	T																T	T																	T	T	G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		92			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																	.
Query SS confidence			.	.																	.
Query Sequence		R	.	.	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	.	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T	E	N	V	T	P	H	A	I	T	S	M	C	T	V	F	A	E	S	E	A
Query Conservation			.	.																	.
Alig confidence			.	.																	.																														.	.	.
Template Conservation																																																			.	.	.
Template Sequence		Q	T	I	L	V	Y	D	L	G	G	G	T	F	D	V	S	I	L	E	L	G	D	G	V	F	E	V	K	A	T	A	G	D	N	H	L	G	G	D	D	F	D	Q	V	I	I	D	Y	L	.	.	.	V	N	Q	F	K	Q	E	H	G	I	D	L	S	K	D	K	M	A	L	Q	R	L	K	D	A	A	E	K
Template Known Secondary structure											S	S											T	T											T	T		S													.	.	.									S			G	G	G
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.																												.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		I	S	L	R	S	A	G	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A	R	L	S	C	E	.	.	.	.	A	P	I	L	F	T	G	G	V	S	H	C	Q	K
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		A	K	K	E	L	S	G	V	T	Q	T	Q	I	S	L	P	F	I	S	A	N	E	N	G	P	L	H	L	E	M	T	L	T	R	A	K	F	E	E	L	S	A	H	L	V	E	R	T	M	G	P	V	R	Q	A	L	Q	D	A	G	L	T	P	A	D	I	D	K	V	I	L	V	G	G	S	T	R	I	P	A
Template Known Secondary structure						T	T	T		S													T	T																		T						T	T												T			G	G	G		S						S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	R	M	L	E	S	H	L	R	M	P	V	N	T	H	P	D	A	Q	F	A	G	A	I	G	A	A	V	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	E	A	I	K	R	E	L	G	K	E	P	H	K	G	V	N	P	D	E	V	V	A	I	G	A	A	I	Q	G
Template Known Secondary structure											S	S			B			S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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