Job Description P39383 Confidence 99.94% Date Thu Jan 5 12:00:15 GMT 2012 Rank 4 Aligned Residues 251 % Identity 15% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		A	Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	D	G	V	I	T	R	R	F	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	P	F	R	P	A	T	A	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	F	L	T	L	T	G	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		M	L	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G	P	G	L
Template Known Secondary structure										S	S	S									S	S													S	S		S																										T			T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
														62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Y	G	R	Q	L	V	D	F	A	D	K	Q	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																															.																	.	.
Template Conservation																																																												.																	.	.
Template Sequence		G	P	A	L	R	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	K	D	P	V	G	L	Y	V	S	G	G	N	T	Q	V	L	A	L	.	E	G	G	R	Y	R	V	F	G	E	T	L	D	I	G	I	.	.	G	N	A
Template Known Secondary structure																			T	T															G	G	G	G	G	T			S								S	S								.		T	T								B	S	S	S			.	.
Template Predicted Secondary structure																																																												.																	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.											.	.	.	.	.												.	.												.
Query SS confidence																.	.	.											.	.	.	.	.												.	.												.
Query Sequence		L	E	V	I	S	R	T	L	G	T	S	V	E	Q	.	.	.	L	D	S	I	T	E	N	V	T	P	.	.	.	.	.	H	A	I	T	S	M	C	T	V	F	A	.	.	E	S	E	A	I	S	L	R	S	A	G	.	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A
Query Conservation																.	.	.											.	.	.	.	.												.	.												.
Alig confidence																.	.	.											.	.	.	.	.												.	.												.
Template Conservation
Template Sequence		I	D	V	F	A	R	E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E
Template Known Secondary structure									T	T			S	S											T			S										T	T																	T			S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		199	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure							.	.	.																								.	.	.											.	.	.
Query SS confidence							.	.	.																								.	.	.											.	.	.
Query Sequence		R	L	S	C	E	.	.	.	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	.	.	.	R	M	P	V	N	T	H	P	D	A	.	.	.	Q	F	A	G	A	I	G	A	A	V	I	G	Q	R	V	R	T	R	R
Query Conservation							.	.	.																								.	.	.											.	.	.
Alig confidence							.	.	.																								.	.	.											.	.	.
Template Conservation
Template Sequence		R	A	V	A	H	T	E	K	D	E	V	V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	G	A	M	I	A	Y	T	G	L	R	M	Y	K	A	G	I	S
Template Known Secondary structure										S						S	G	G	G	G																T								G	G	G	T	S	S		S													T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions