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Job DescriptionP39383
Confidence99.59%DateThu Jan 5 12:00:15 GMT 2012
Rank31Aligned Residues246
% Identity17%Templatec2dpnB_
PDB info PDB header:transferaseChain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20 .........30.... .....40.........50.........60..
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Query Sequence  YSIGIDSGSTATKGILLA. DGVITRRFLVPTPF. . . . . . . . . . . . . . . . . RPATAITEAWETLREGLETTPFLTLTGY. .
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Template Sequence  FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQRE
Template Known Secondary structure 

SS
SSS



B
SSTT


T

TTT


SS
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   63......70.........80.........90...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GRQLVDFADKQVTEISCHGLGARFLAPATRA. . . . . . . . . . . . .
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Template Sequence  TTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGT
Template Known Secondary structure 
TTTTSS

TT



TT
TTTS

S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VDTWLIWNLTGGKVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPIRGVLGD
Template Known Secondary structure  TTTS


B
TSTTB
SSSSSB
T


TTS


B

TTS


B

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B
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   94.....100.........110.. .......120.........130.........140..
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Query Sequence  . . . . . . . . . . . . . . . VIDIGGQDSKVIQLDDDGN. . . . . . . . . . . . . . . . LCDFLMNDKCAAGTGRFLEVISRTLGTSVE
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Template Sequence  QQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAVGWLKEVGLIRES
Template Known Secondary structure  TT

STT
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SSS
TTS
STTTTSSSST
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   143......150.........160.........170. ........180.........190.........200 ......
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Query Sequence  QLDSITENVTPHAITSMCTVFAESEAISL. . . . . . . . . . . RSAGVAPEAILAGVINAMARRSANFIARL. . . . . SCEAPI
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Template Sequence  AEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEAGVRLKVL
Template Known Secondary structure  TTGGG
SS
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TT


TTT

TT





TT

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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   207..210.........220.........230.........240.........
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Query Sequence  LFTGGVSHCQKFARMLESHLRMPVNTHPDAQFAGAIGAAVIGQ
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Template Sequence  KADGGMAQNRLFLKIQADLLGVPVAVPEVTE. TTALGAALMAG
Template Known Secondary structure  SGGGG
TS
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   403......410.........420.........430... ......440....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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