Job Description P39383 Confidence 99.60% Date Thu Jan 5 12:00:15 GMT 2012 Rank 29 Aligned Residues 247 % Identity 16% Template c2cgkB_ PDB info PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. Resolution 2.46 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.					.	30	.	.	.	.														.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																						.									.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.									.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	.	D	G	V	I	T	R	R	F	.	.	.	.	L	V	P	T	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	A	T	A	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	F	L	T	L	T	G	Y
Query Conservation																						.									.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.									.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	N	C	V	A	V	D	L	G	A	S	S	G	R	V	M	L	A	R	Y	E	R	E	C	R	S	L	T	L	R	E	I	H	R	F	N	N	G	L	H	S	Q	N	G	Y	V	T	W	D	V	D	S	L	E	S	A	I	R	L	G	L	N	K	V	C	A	A	G	I	A	I	D	S	I	G	I	D	T	W
Template Known Secondary structure												S	S											T	T	T	T																	S	S	S																							T	T										B
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
																																							63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	Q	L	V	D	F	A	D	K	Q	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	A	T	R	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	D	F	V	L	L	D	Q	Q	G	Q	R	V	G	L	P	V	A	Y	R	D	S	R	T	N	G	L	M	A	Q	A	Q	Q	Q	L	G	K	R	D	I	Y	Q	R	S	G	I	Q	F	L	P	F	N	T	L	Y	Q	L	R	A	L	T	E	Q	Q	P	E	L	I	P	H	I	A	H	A	L	L	M	P	D
Template Known Secondary structure		S	S							T	T	S		B		S			B		T	T		S	T	T	T	T									T	T														T	T														T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	S	Y	R	L	T	G	K	M	N	W	E	Y	T	N	A	T	T	T	Q	L	V	N	I	N	S	D	D	W	D	E	S	L	L	A	W	S	G	A	N	K	A	W	F	G	R	P	T	H	P	G	N	V	I	G	H	W	I	C	P	Q	G	N	E	I	P	V	V	A	V	A	S	H	D	T	A	S	A	V
Template Known Secondary structure									S					B						T	T	T		B		T	T	T	S	S	B									T			G	G	G					B		T	T									S	S	S											B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
												94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	S	P	L	N	G	S	R	A	A	Y	L	S	S	G	T	W	S	L	M	G	F	E	S	Q	T	P	F	T	N	D	T	A	L	A	A	N	I	T	N	E	G	G	A	E	G	R	Y	R	V	L	K	N	I	M	G	L	W	L	L	Q	R	V	L	Q	E	R	Q	I	N	D	L	P	A	L	I	A	A	T
Template Known Secondary structure			T	S				S	S	S							S	S	S								S	S				S						T	T							G	G	G											T										T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		149	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Query Sequence		E	N	V	T	P	H	A	I	T	S	M	C	.	.	.	.	.	.	.	.	.	.	.	.	T	V	F	A	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A	R	L	.	.	.	.	.	S	C	E	A	P	I	L	F	T	G	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation
Template Sequence		Q	A	L	P	A	C	R	F	I	I	N	P	N	D	D	R	F	I	N	P	D	E	M	C	S	E	I	Q	A	A	C	R	E	M	A	Q	P	I	P	E	S	D	A	E	L	A	R	C	I	F	D	S	L	A	L	L	Y	A	D	V	L	H	E	L	A	Q	L	R	G	E	D	F	S	Q	L	H	I	V	G	G
Template Known Secondary structure		T	T	S		S	S	S	S				T	T	S	G	G	G	T	S		S													T	T						S																												T	S			S						S	G
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	R	M	P	V	N	T	H	P	D	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		G	C	Q	N	T	L	L	N	Q	L	C	A	D	A	C	G	I	R	V	I	A	.	.	G	P	V	E	A	S	T	L	G	N	I	G	I	Q	L
Template Known Secondary structure		G	G	G													T	S					.	.			S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions