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Job DescriptionP39383
Confidence99.69%DateThu Jan 5 12:00:15 GMT 2012
Rank15Aligned Residues239
% Identity15%Templatec1mwmA_
PDB info PDB header:structural proteinChain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30... ......40.....
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Query Sequence  SIGIDSGSTATKGILLADGVITRRFLVPTP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FRPATAITEAWE
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Template Sequence  LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDTNIAWQYSDVNVVAVHHA
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SS
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TGGGGS
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   46...50.........60.........70 .........80.........90..
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Query Sequence  TLREGLETTPFLTLTGYGRQLVDFA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DKQVTEISCHGLGARFLAPATR.
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Template Sequence  LLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDS
Template Known Secondary structure  TSS

S

B
TTS
B
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TTB


STTS
TT
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   93......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  . AVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITENVTPHAITSMCTVFAESEAISL
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Template Sequence  LLIIDLGGTTLDISQV. MGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENK
Template Known Secondary structure 
SS
.GGG

TT

TT

TTGGGTTT

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   166...170.........180. ........190.........200.........210.........220.........230.........240....
 
   172.......180.........190.........200.........210.........220......... 230.........240........
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Query Sequence  RSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQKFARMLESHLRMP. . . VNTHPDAQFAGAIGAAVIG
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Template Sequence  IS. . . IVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL. . ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG
Template Known Secondary structure  ...TT

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STT..T

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   245. ...250.........260.........270.........280..... ....290.........300.........310.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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