Job Description P0ACE0 Confidence 100.00% Date Thu Jan 5 11:17:59 GMT 2012 Rank 1 Aligned Residues 539 % Identity 50% Template c3myrB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	I	T	I	D	P	V	T	R	I	E	G	H	L	R	I	D	C	E	I	E	N	G	V	V	S	K	A	W	A	S	G	T	M	W	R	G	M	E	E	I	V	K	N	R	D	P	R	D	A	W	M	I	V	Q	R	I	C	G	V	C	T	T	T	H	A	L	S	S	V	R	A	A	E	S	A	L	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	I	V	V	D	P	I	T	R	I	E	G	H	L	R	I	E	A	Q	M	D	G	A	T	I	A	Q	A	Y	S	S	G	T	M	V	R	G	I	E	T	I	L	K	G	R	D	P	R	D	A	W	A	F	V	Q	R	I	C	G	V	C	T	L	V	H	G	I	A	S	V	R	A	V	E	D	A	L	R	I
Template Known Secondary structure								S			S	S	B	S										T	T																			T	T	T	S		G	G	G							T	T		S	T	T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		1003	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	P	V	N	A	Q	Y	I	R	N	I	I	L	A	A	H	T	T	H	D	H	I	V	H	F	Y	Q	L	S	A	L	D	W	V	D	I	T	S	A	L	Q	A	D	P	T	K	A	S	E	M	L	K	G	V	S	T	W	H	L	N	S	P	E	E	F	T	K	V	Q	N	K	I	K	D	L	V	A	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	P	L	N	A	Q	L	I	R	N	L	M	I	G	A	Q	Y	I	H	D	H	V	M	H	F	Y	H	L	H	A	L	D	W	V	D	V	V	S	A	L	S	A	D	P	R	A	T	S	E	L	A	Q	S	I	S	A	W	P	K	S	S	P	G	Y	F	A	D	T	Q	K	R	I	K	T	F	V	E	S	G
Template Known Secondary structure																														T	T	G	G	G	T							T	T																	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		1083	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	I	F	A	N	G	Y	W	G	H	P	A	M	K	L	P	P	E	V	N	L	I	A	V	A	H	Y	L	Q	A	L	E	C	Q	R	D	A	N	R	V	V	A	L	L	G	G	K	T	P	H	I	Q	N	L	A	V	G	G	V	A	N	P	I	N	L	D	G	L	G	V	L	N	L	E	R	L	M	Y
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence		Q	L	G	I	F	A	N	G	Y	W	G	H	P	A	Y	R	L	P	P	E	A	N	L	M	A	V	A	H	Y	L	E	A	L	A	W	Q	R	D	T	A	K	F	H	A	I	F	G	G	K	N	P	H	P	N	F	.	V	V	G	G	V	P	S	P	I	D	L	D	S	D	S	A	L	N	A	K	R	L	A	E
Template Known Secondary structure				G	G	G	T	T			T	T		T	T																										T								S	S	S	S	S				.	B	T	T	B		S			B		T	T		T	T	S	B
Template Predicted Secondary structure																																																									.
Template SS confidence
		1163	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.		.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		I	K	S	F	I	D	K	L	S	D	F	V	E	Q	V	Y	K	V	D	T	A	V	I	A	A	F	Y	P	E	W	L	T	R	G	K	G	A	V	N	Y	L	S	V	P	E	F	P	T	D	S	K	N	G	.	.	S	F	L	F	P	G	G	Y	I	E	N	A	D	L	S	S	Y	R	P	I	T	S	H	S	D
Query Conservation																																																							.	.
Alig confidence																																																							.	.																	.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		V	R	N	L	I	Q	S	M	R	T	F	V	D	Q	V	Y	V	P	D	T	L	A	I	A	G	F	Y	K	D	W	G	E	R	G	E	G	L	G	N	F	L	C	Y	G	D	L	P	T	G	A	S	L	D	P	A	T	F	L	F	P	R	G	A	I	L	D	R	D	L	S	T	.	.	.	.	I	H	E	V	D
Template Known Secondary structure																T										T	T		G	G	G	G	S	S	S														S	S	S	S			G	G	G										T	T		T	T		.	.	.	.		B
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		1242	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.					.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.											.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	L	I	K	G	I	Q	E	S	A	K	H	S	W	Y	K	.	.	.	.	D	E	A	P	Q	A	P	W	E	G	T	T	I	P	A	Y	.	.	.	.	.	.	.	.	.	.	D	G	W	S	D	D	G	K	Y	S	W	V	K	S	P	T	F	Y	G	K	T	V	E	V	G	P	L	A	N	M	L	V	K
Query Conservation																			.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	A	T	G	E	I	Q	E	F	V	N	H	S	W	Y	E	Y	S	V	G	N	D	R	G	L	H	P	Y	E	G	Q	T	N	L	E	Y	D	R	R	G	G	V	A	P	P	Y	K	Q	L	D	V	S	D	G	Y	S	W	L	K	A	P	R	W	K	G	R	S	V	E	V	G	P	L	A	R	V	L	M	L
Template Known Secondary structure		S	S		T	T	T						T	T	S	S	B			T	T		T	T	S		B		G	G	G					B		S	T	T	T	T				S	S		S	S			T	T	S				S	S						T	T	B			B		S
Template Predicted Secondary structure
Template SS confidence
		1318	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	G	R	E	S	T	Q	N	K	L	N	E	I	V	A	I	Y	Q	K	L	T	G	N	T	L	E	V	A	Q	L	H	S	T	L	G	R	I	I	G	R	T	V	H	C	C	E	L	Q	D	I	L	Q	N	Q	Y	S	A	L	I	T	N	I	G	K	G	D	H	T	T	F	V	K	P	N	I	P	A	T
Query Conservation
Alig confidence																						.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		Y	A	T	G	H	D	Q	A	R	E	L	V	D	S	T	L	S	R	L	D	.	.	.	.	.	.	L	P	V	D	A	L	Y	S	T	L	G	R	T	A	A	R	A	L	E	S	K	I	L	V	D	A	M	Q	G	W	Y	D	G	L	I	A	N	V	K	S	G	D	T	K	T	F	N	E	T	L	W	E	P	S
Template Known Secondary structure				T	T																T	.	.	.	.	.	.			G	G	G	G	S	S																																T	T					B			T	T		S	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		1398	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.							.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.
					467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure		.	.	.																																																													.
Query SS confidence		.	.	.																																																													.
Query Sequence		.	.	.	G	E	F	K	G	V	G	F	L	E	A	P	R	G	M	L	S	H	W	M	V	I	K	D	G	I	I	S	N	Y	Q	A	V	V	P	S	T	W	N	S	G	P	R	N	F	N	D	D	V	G	P	Y	E	Q	S	L	V	G	T	P	.	V	A	D	P	N	K	P	L	E	V	V	R	T	I	H	S
Query Conservation		.	.	.																																																													.
Alig confidence		.	.	.																																																													.
Template Conservation
Template Sequence		S	W	P	S	R	A	Q	G	V	G	I	M	E	A	P	R	G	A	L	G	H	W	I	V	I	E	D	G	R	I	A	N	Y	Q	A	V	V	P	S	T	W	N	A	G	P	R	D	G	R	G	Q	A	G	A	Y	E	A	A	L	Q	D	N	H	Q	L	V	D	V	K	Q	P	I	E	I	L	R	T	I	H	S
Template Known Secondary structure		G	S		S											T	T											T	T																				T	T												S	S		B		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1472	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.
		543	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	P	C	M	A	C	A	V	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	P	C	I	A	C	A	V	H
Template Known Secondary structure		T			B
Template Predicted Secondary structure
Template SS confidence
		1552	.	.	.	.	.	.	.	1560	.