Job Description P0ACE0 Confidence 100.00% Date Thu Jan 5 11:17:59 GMT 2012 Rank 8 Aligned Residues 477 % Identity 39% Template c2wpnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Resolution 2.04 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	Q	R	I	T	I	D	P	V	T	R	I	E	G	H	L	R	I	D	C	E	I	E	N	G	V	V	S	K	A	W	A	S	G	T	M	W	R	G	M	E	E	I	V	K	N	R	D	P	R	D	A	W	M	I	V	Q	R	I	C	G	V	C	T	T	T	H	A	L	S	S	V	R	A	A	E	S	A	L
Query Conservation
Alig confidence					.																																																									.
Template Conservation					.																																																									.
Template Sequence		R	T	T	.	I	A	I	D	P	V	T	R	I	E	G	H	L	K	A	E	V	V	V	E	N	G	K	V	V	D	A	R	L	S	G	G	M	Y	R	G	F	E	T	I	L	R	G	R	D	P	R	D	A	S	Q	I	V	Q	R	I	.	G	V	C	P	T	A	H	S	T	A	S	V	L	A	L	D	E	A	F
Template Known Secondary structure					.				S	S			S	S	S	S										T	T																			T	T	T	S		G	G	G					G	G	G		.			S
Template Predicted Secondary structure					.																																																									.
Template SS confidence
		16	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	D	V	P	V	N	A	Q	Y	I	R	N	I	I	L	A	A	H	T	T	H	D	H	I	V	H	F	Y	Q	L	S	A	L	D	W	V	D	I	T	S	A	L	Q	A	D	P	T	K	A	S	E	M	L	K	G	V	S	T	W	H	L	N	S	P	E	E	F	T	K	V	Q	N	K	I	K	D	L	V	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	K	V	P	N	N	G	R	I	T	R	N	L	I	F	G	A	N	Y	L	Q	S	H	I	L	H	F	Y	H	L	S	A	Q	D	F	V	Q	G	P	D	T	A	P	F	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T																														T	T	G	G	G	T	S				S	S	T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	Q	L	G	I	F	A	N	G	Y	W	G	H	P	A	M	K	L	P	P	E	V	N	L	I	A	V	A	H	Y	L	Q	A	L	E	C	Q	R	D	A	N	R	V	V	A	L	L	G	G	K	T	P	H	I	Q	N	L	A	V	G	G	V	A	N	P	I	N	L	D	G	L	G	V	L	N	L	E	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	F	P	K	S	D	L	R	L	S	K	E	L	N	K	A	G	V	D	Q	Y	I	E	A	L	E	V	R	R	I	C	H	E	M	V	A	L	F	G	G	R	M	P	H	V	Q	G	Q	V	V	G	G	A	T	E	I	P	T	K	E	K	.	.	.	.	.	.	.	.	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.			T	T																																				S	S	S	S	S		S	S			T	T			S	S							.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template SS confidence
												142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	I	K	S	F	I	D	K	L	S	D	F	V	E	Q	V	Y	K	V	D	T	A	V	I	A	A	F	Y	P	E	W	L	T	R	G	K	G	A	V	N	Y	L	S	V	P	E	F	P	T	D	S	K	N	G	S	F	L	F	P	G	G	Y	I	E	N	A	D	L	S	S	Y	R	P	I	T	S	H	S	D
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		V	E	Y	A	A	R	F	K	K	V	R	D	F	V	E	Q	K	Y	V	P	V	V	Y	T	I	G	S	K	Y	K	D	M	F	K	V	G	Q	G	F	K	A	A	L	C	V	G	A	F	P	L	D	N	S	G	K	K	H	L	F	M	P	G	V	Y	A	K	G	K	D	M	P	F	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T											T		G	G	G	G	S	S			T	T												S	T	T	S												T	T						.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		E	Y	L	I	K	G	I	Q	E	S	A	K	H	S	W	Y	K	D	E	A	.	P	Q	A	P	W	E	G	T	T	I	P	A	Y	D	G	W	S	D	D	G	K	Y	S	W	V	K	S	P	T	F	Y	G	K	T	V	E	V	G	P	L	A	N	M	L	V	K	L	A	A	G	R	E	S	T	Q	N	K	L	N
Query Conservation																						.
Alig confidence		.	.																			.															.	.	.
Template Conservation		.	.																																		.	.	.
Template Sequence		.	.	D	P	S	K	I	K	E	Y	V	K	Y	S	W	F	A	E	E	T	T	G	L	N	Y	K	E	G	K	T	I	P	A	P	D	.	.	.	K	A	G	A	Y	S	F	V	K	A	P	R	Y	D	G	L	S	L	E	V	G	P	L	A	R	M	W	V	N	N	P	E	L	S	P	V	G	K	K	L	L	K
Template Known Secondary structure		.	.		G	G	G						T	T	B	S	B		G	G	G	T	T	B		G	G	G					B		T	T	.	.	.		T	T			B	S	S						T	T	B			B		S											B
Template Predicted Secondary structure		.	.																																		.	.	.
Template SS confidence
				276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	V	A	I	Y	Q	K	L	T	G	N	T	L	E	V	A	Q	L	H	S	T	L	G	R	I	I	G	R	T	V	H	C	C	E	L	Q	D	I	L	Q	N	Q	Y	S	A	L	I	T	N	I	G	K	G	D	H	T	T	F	V	K	P	N	I	P	A	T	G	E	F	K	G	V	G	F	L	E	A	P	R
Query Conservation
Alig confidence														.																																			.	.	.	.	.															.	.
Template Conservation														.																																			.	.	.	.	.															.	.
Template Sequence		D	L	F	G	I	S	A	K	K	F	R	D	.	L	G	E	E	A	A	F	S	L	M	G	R	H	V	A	R	A	E	E	T	Y	Y	M	L	G	A	I	E	G	W	L	K	E	I	.	.	.	.	.	K	A	G	E	D	T	V	V	M	P	A	V	P	A	.	.	S	A	E	G	T	G	F	T	E	A	P	R
Template Known Secondary structure									S	B	G	G	G	.	G						S	S																											.	.	.	.	.		T	T				B							S	.	.	S										T	T
Template Predicted Secondary structure														.																																			.	.	.	.	.															.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.						.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	L	S	H	W	M	V	I	K	D	G	I	I	S	N	Y	Q	A	V	V	P	S	T	W	N	S	G	P	R	N	F	N	D	D	V	G	P	Y	E	Q	S	L	V	G	T	P	V	A	D	P	N	K	P	L	E	V	V	R	T	I	H	S	F	D	P	C	M	A	C	A	V	H
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		G	S	L	L	H	Y	V	K	V	K	D	S	K	I	D	N	Y	Q	I	V	S	A	S	L	W	N	C	N	P	R	D	D	M	G	Q	R	G	A	V	E	E	A	L	I	G	I	P	V	D	D	I	Q	N	P	V	N	V	A	R	L	I	R	A	F	D	P	L	.	G	C	A	V	H
Template Known Secondary structure												T	T															S					T	T										T	T	T		B		S		T	T	S											T				.
Template Predicted Secondary structure																																																																					.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.