|   |
1 | . | . | . | . | . | . | . | |
. | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | I | I | E | A | N | V | . |
A | T | P | D | A | R | V | A | I | T | I | A | R | F | N | N | F | I | N | D | S | L | L | E | G | A | I | D | A | L | K | R | I | G | Q | V | K | D | E | N | I | T | V | V | W | V | P | G | A | Y | E | L | P | L | A | A | G | A | L | A | K | T | G | K | Y | D | A | V | I | A | L |
Query Conservation |   |
|   |   |   |   |
|   |   | . |   |   |   |   |   |
|
|
|
|
|   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |
| . | . |   |   |   |   |
|   |
|   |   |
|
|
|
|   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|
Template Sequence |   |
M | N | E | L | E | G | Y | V | T | K | A | Q | S | F | R | F | A | I | V | V | A | R | F | N | E | F | V | T | R | R | L | M | E | G | A | L | D | T | F | K | K | Y | S | . |
. |
V | N | E | D | I | D | V | V | W | V | P | G | A | Y | E | L | G | V | T | A | Q | A | L | G | K | S | G | K | Y | H | A | I | V | C | L |
Template Known Secondary structure |   |
|
|
|
|
|
|
| S | S | S |
| T | T |
|
|  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . |
|
| S |
|
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | T | V | I | R | G | G | T | A | H | F | E | Y | V | A | G | G | A | S | N | G | L | A | H | V | A | Q | D | S | E | I | P | V | A | F | G | V | L | T | T | E | S | I | E | Q | A | I | E | R | A | G | T | K | A | G | N | K | G | A | E | A | A | L | T | A | L | E | M | I | N | V | L | K | A |
Query Conservation |   |
|   |
|
|
|
|
|
|   |
|   |
|   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |
|
|
|   |   |
|   |
|   |   |   |
|
|
|
|   |
|
|
|   |
|
|
|
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |
|   |
|   |
|   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |
|
|
|   |   |
|
|   |   |   |   |   |
|
|
|   |
|
|
|   |
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
G | A | V | V | K | G | D | T | S | H | Y | D | A | V | V | N | S | A | S | S | G | V | L | S | A | G | L | N | S | G | V | P | C | V | F | G | V | L | T | C | D | N | M | D | Q | A | I | N | R | A | G | G | K | A | G | N | K | G | A | E | S | A | L | T | A | I | E | M | A | S | L | F | E | H |
Template Known Secondary structure |   |
 |  |
|
|
|
| S | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
  |