Job Description P61714 Confidence 86.65% Date Thu Jan 5 12:07:24 GMT 2012 Rank 22 Aligned Residues 126 % Identity 14% Template c3l6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		P	D	A	R	V	A	I	T	I	A	R	F	N	N	F	I	N	D	S	L	L	E	G	A	I	D	A	L	K	R	I	G	Q	V	K	D	E	N	I	T	V	V	W	V	P	G	A	Y	E	L	P	L	A	A	G	A	L	A	K	T	G	.	K	Y	D	A	V	I	A	L	G	T	V	I	R	G	G	T	A	H
Query Conservation																																																															.
Alig confidence																																		.																													.								.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	G	R	I	V	E	I	T	G	T	A	N	V	Y	T	T	N	E	R	H	R	G	F	L	K	G	I	E	N	E	P	.	T	L	S	I	V	D	S	V	S	G	N	Y	D	P	V	T	S	E	R	V	X	R	Q	V	I	D	S	G	I	P	F	D	A	V	Y	C	.	.	.	.	.	.	.	.	.	.	H
Template Known Secondary structure		S										S	T	T																T	T		T	.	T										T	T															T	T				S					.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																		.																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.											.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.
Query Sequence		F	E	Y	V	A	G	G	A	S	N	G	L	A	H	V	A	Q	D	S	E	I	P	V	A	F	G	V	L	T	T	E	S	I	E	Q	A	I	E	R	A	G	T	K	A	.	.	.	.	.	.	G	N	K	G	A	E	A	A	L	T	A	L	E	M	I	N
Query Conservation																																														.	.	.	.	.	.
Alig confidence																			.	.																										.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		N	D	D	I	A	X	G	V	L	E	A	L	K	K	A	K	I	.	.	S	G	K	I	V	V	G	I	D	G	N	R	A	I	L	E	A	V	D	X	K	S	X	D	A	T	V	V	Q	S	A	E	E	X	X	K	V	A	F	S	A	L	K	L	H	T	K
Template Known Secondary structure		S														T	T		.	.																				T	T	S	S																								T
Template Predicted Secondary structure																			.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions