Job Description P61714 Confidence 61.33% Date Thu Jan 5 12:07:24 GMT 2012 Rank 60 Aligned Residues 125 % Identity 17% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		P	D	A	R	V	A	I	T	I	A	R	F	N	N	F	I	N	D	S	L	L	E	G	A	I	D	A	L	K	R	I	G	Q	V	K	D	E	N	I	T	V	V	W	V	P	G	A	Y	E	L	P	L	A	A	.	.	G	A	L	A	K	T	G	K	Y	D	A	V	I	A	L	G	T	V	I	R	G	G	T	A
Query Conservation																																																								.	.
Alig confidence																																		.	.																					.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.																																						.	.	.	.	.	.	.	.	.
Template Sequence		G	K	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D	E	A	I	A	K	Y	P	.	.	D	I	K	I	V	A	K	Q	A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T											T	T																T	T		T	.	.	T										T	T																	S								S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		H	F	E	Y	V	A	G	G	A	S	N	G	L	A	H	V	A	Q	D	S	E	I	P	V	A	F	G	V	L	T	T	E	S	I	E	Q	A	I	E	R	.	.	.	.	.	.	A	G	T	K	A	G	N	K	G	A	E	A	A	L	T	A	L	E	M	I	N
Query Conservation																																										.	.	.	.	.	.
Alig confidence		.															.	.																								.	.	.	.	.	.
Template Conservation		.															.	.
Template Sequence		.	N	D	E	M	A	L	G	A	I	K	A	I	E	A	.	.	A	N	R	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M	A	A	T	I	A	Q	Q	P	A	L	M	G	S	L	G	V	E	M	A	D	K	Y	L	K
Template Known Secondary structure		.	S														.	.	T	T		T	T																			T	S																									T
Template Predicted Secondary structure		.															.	.
Template SS confidence
			191	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions