Job Description P14376 Confidence 97.48% Date Thu Jan 5 11:34:01 GMT 2012 Rank 214 Aligned Residues 133 % Identity 11% Template c3rtyA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: structure of an enclosed dimer formed by the drosophila period protein Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.																									.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	A	P	V	G	I	C	I	L	R	T	A	D	G	V	N	I	L	S	N	E	L	A	H	T	Y	L	N	M	L	T	H	E	D	R	Q	R	L	T	Q	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	Q	Q	V	N	F	V	D	V	L	T	S
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		Q	K	S	P	K	F	A	I	R	H	T	A	T	.	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G	A	S	F	C	S	K	P	Y	R	F	L	I	Q
Template Known Secondary structure		S	S										T	T	.		B						T	T													T	T	S	B	G	G	G	G	B		G	G	G															T	T	S	T	T				B									T
Template Predicted Secondary structure															.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.																.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	T	N	L	Q	I	S	F	V	H	S	R	Y	.	.	.	.	R	N	E	N	V	A	I	C	V	L	V	D	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	V	K	M	E	E	S	L	Q	E	M	A	Q	A	A	E	Q	A	S	Q	S	K	S	M	F	L	A	T	V	S	H	E
Query Conservation																.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q	G	P	K	Q	C	N	V	F	E	A	A	P	T	C	K	L	K	I	S	E	E	A	Q	S	R	N	T	R	I	K	E	D	I	V	K	R	L	A	E	T	V	S	R	P	S	E	T
Template Known Secondary structure		T	S															T	T	T		S															S	S	S		S	S	S	S			S																										S								T
Template Predicted Secondary structure
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		481	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		L	R	T	P	L	Y	.	.	.	.	G	I	I	G	N	L	D	L	L	Q	T
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		V	K	Q	E	V	S	R	R	C	Q	A	L	A	S	F	M	E	T	L	M	D
Template Known Secondary structure		T	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions