Job Description P14376 Confidence 97.87% Date Thu Jan 5 11:34:01 GMT 2012 Rank 193 Aligned Residues 152 % Identity 13% Template c3p7nB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:sensor histidine kinase; PDBTitle: crystal structure of light activated transcription factor el222 from2 erythrobacter litoralis Resolution 2.10 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	N	R	K	I	V	A	S	A	P	V	G	I	C	I	L	R	T	A	.	.	D	G	V	N	I	L	S	N	E	L	A	H	T	Y	L	N	M	L	T	H	E	D	R	Q	R	L	T	Q	I	I	C	G	Q	Q	V	N	F	V	D	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	W	V	L	D	L	I	E	A	S	P	I	A	S	V	V	S	D	P	R	L	A	D	N	P	L	I	A	I	N	Q	A	F	T	D	L	T	G	Y	S	E	E	E	C	V	G	R	N	C	R	F	L	A	G	S	G	T	E	P	W	L	T	D	K	I	R	Q	G	V	R	E	H	K	P	V	L	V	E	I	L
Template Known Secondary structure		S								T		S	S							T	T	S	T	T																						T	T	S		G	G	G	G	B		T	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
				418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure		.	.																	.	.	.	.
Query SS confidence		.	.																	.	.	.	.
Query Sequence		.	.	T	S	N	N	T	N	L	Q	I	S	F	V	H	S	R	Y	.	.	.	.	R	N	E	N	V	A	I	C	V	L	V	D	V	S	S	R	V	K	M	E	E	S	L	Q	E	M	A	Q	A	A	E	Q	A	S	Q	S	K	S	M	F	L	A	T	V	S	H	E	L	R	T	P	L	Y	G	I	I	G	N
Query Conservation		.	.																	.	.	.	.
Alig confidence		.	.																	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Y	K	K	D	G	T	P	F	R	N	A	V	L	V	A	P	I	Y	D	D	D	D	E	L	L	Y	F	L	G	S	Q	V	E	V	G	M	A	R	R	E	R	A	A	E	M	L	K	T	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	L	E	V
Template Known Secondary structure					T	T	S															T	T	T	T																								T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																								.	160	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	L	L	Q	T	K	E	L	P	K	G	V	D	R	L	V	T	A	M	N	N	S	S	S	L	L	L	K	I	I	S	D	I	L	D	F	S	K	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	L	V	A	S	G	L	R	N	K	E	V	A	A	R	L	G	L	S	E	K	T	V	K	M	H	R	G	L	V	M	E	K	L	N	L	K	T	S
Template Known Secondary structure							T	T											T																	T	T			S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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