Job Description P14376 Confidence 95.38% Date Thu Jan 5 11:34:01 GMT 2012 Rank 255 Aligned Residues 90 % Identity 17% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.																						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	V	N	I	L	S	N	E	L	A	H	T	Y	L	N	M	L	T	H	E	D	R	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	Q	I	I	C	G	Q	Q	V	N	F	V	D	V	L	T	S	N	N	T	N	L	Q	I	S	F	V	H	S	R	Y	R	N
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N
Template Known Secondary structure		T	S	B						T	T						S							T	T	S	B	T	G	G	G	B		T	T	T	T	T													T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		436						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.										.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	N	V	A	I	C	V	L	V	D	V	S	S	R	V	K	M	E	.	.	.	.	.	.	.	.	.	E	S	L	Q	E	M	A	Q	A	A	E	Q	A
Query Conservation			.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D	V	F	A	A	P	P	C	P	E	P	S	V	Q	E	L	T	E	Q	I	H	R	L
Template Known Secondary structure		T	T	T																	S	S	S		T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions