Job Description P14376 Confidence 97.78% Date Thu Jan 5 11:34:01 GMT 2012 Rank 198 Aligned Residues 225 % Identity 12% Template c3by9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the v. cholerae histidine kinase dctb2 sensor domain Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	R	E	S	E	I	R	Q	E	F	N	L	S	S	D	Q	A	Q	R	F	I	Q	R	T	S	D	V	M	K	E	L	K	Y	I	A	E	N	R	L	S	A	E	N	G	V	L	S	P	R	G	R	E	T	Q	A	D	V	P	A	F	E	P	L	F	A	D	S	D	C	S	A	M	S	N	T	W	R	G	S
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	Q	Y	Q	A	L	L	N	E	H	Q	S	Q	L	D	R	F	S	S	H	I	V	A	T	L	D	K	Y	A	H	I	P	H	L	I	S	K	D	K	E	L	V	D	A	L	L	S	A	Q	N	S	A	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G																								T	T	T	T	T							T										T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	L	A	W	F	M	R	Y	W	R	D	N	F	S	A	A	Y	D	L	N	R	V	F	L	I	G	S	D	N	L	C	M	A	N	F	G	L	R	D	M	P	V	E	R	D	T	A	L	K	A	L	H	E	R	I	N	K	Y	R	N	A	P	Q	D	D	S	G	S	N	L	Y	W	I	S	E	G	P	R
Query Conservation
Alig confidence		.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	D	I	T	N	R	Y	L	E	Q	V	N	E	V	I	Q	A	A	D	T	Y	L	I	D	R	F	G	N	T	I	A	S	S	N	W	N	L	D	R	S	F	I	G	R	.	.	.	.	.	.	.	N	F	A	W	R	P	Y	F	Y	L	S	I	A	G	Q	K	S	Q	Y	F	A	L	G	S	T
Template Known Secondary structure		.	.	.	.	.															T		S							T	T	S	B					T	T	T	T	S	T	T			T	T		.	.	.	.	.	.	.	B		T	T	S							T	T	T	S									T	T
Template Predicted Secondary structure		.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
							83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	V	G	Y	F	Y	A	L	T	P	V	Y	L	A	N	R	L	Q	A	L	L	G	V	E	Q	T	I	R	M	E	N	F	F	L	P	G	T	L	P	M	G	V	T	I	L	D	E	N	G	H	T	L	I	S	L	T	G	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		S	G	Q	R	G	Y	Y	Y	A	Y	P	V	I	Y	A	A	E	I	L	G	V	I	V	V	K	X	D	L	S	A	I	E	Q	G	W	Q	N	.	K	S	S	Y	F	V	A	T	D	D	H	Q	V	V	F	X	S	S	Q	P	A	W	L	F	H	S	V	A	D	L	S	P	A	Q	L	N	D	I	R	Q	S	Q
Template Known Secondary structure		T														T	T												S						T				.	S	S								T	T		B					S	S	G	G	G	T	T		B	S	S														T
Template Predicted Secondary structure																																							.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
													262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	S	K	I	K	G	D	P	R	W	M	Q	E	R	S	W	F	G	Y	T	E	G	F	R	E	L	V	L	K	K	N	L	P	P	S	S	L	S	I	V	Y	S	V	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	L	D	S	P	I	P	S	L	G	W	Q	G	D	L	Q	A	E	Q	S	E	W	R	K	P	E	K	H	W	L	Q	D	D	Y	I	V	S	S	R	P	L	P	E	L	A	L	T	I	R	V	L	S	P
Template Known Secondary structure		T	T	T	T					B				B	S		T	T		S					B			T	T		S													G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions