 |
Job Description | P14376 | Confidence | 82.47% | Date | Thu Jan 5 11:34:01 GMT 2012 |
Rank | 309 | Aligned Residues | 94 |
% Identity | 14% | Template | c3b9qA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit |
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
|
Resolution | 1.75 Å |
|
 |
  |   |
823 | . | . | . | . | . | . | 830 | . | . | . | |
|
|
. | . | . | . | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . | . | . | . | . | . | . | . | 880 | . | . | . | . | . | . | . | . | . | 890 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | D | M | M | I | L | V | V | D | D | H | . |
. |
. |
P | I | N | R | R | L | L | A | D | Q | L | G | S | L | G | Y | Q | C | K | T | A | N | D | G | . |
. |
. |
. |
. |
. |
V | D | A | L | N | V | L | S | K | N | H | I | D | I | V | L | S | D | V | N | M | P | N | M | D | G | Y | R | L | T | Q | R | I | R | Q | L |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|   | . | . | . |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|
| . | . | . | . | . | . |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |
|   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|   |   |
|
|   |
|   |
|
|   |
|
|
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |
Template Sequence |   |
E | G | T | K | V | L | M | A | A | G | D | T | F | R | A | A | A | S | D | Q | L | E | I | W | A | E | R | T | G | C | E | I | V | V | A | E | K | A | K | A | A | T | V | L | S | K | A | V | K | R | G | K | E | E | G | Y | D | V | V | L | C | D | T | S | G | R | L | H | T | N | Y | S | L | M | E | E | L | I | A | C |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
894 | . | . | . | . | . | 900 | . | . | . | . | . | . | . | . | . | 910 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | L | T | L | P | V | I | G | V | T | A | N | A | L | A | E | E | K | Q | R | C | L | E |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | K | A | V | G | K | I | V | S | G | A | P | N | E | I | L | L | V | L | D | G | N | T | G | L | N | M | L | P | Q | A | R | E |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | S | T | T |
|
| S |  |  |  |  |  |  |  | G | G | G | G | G | G | G |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
273 | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|