Job Description P14376 Confidence 99.78% Date Thu Jan 5 11:34:01 GMT 2012 Rank 133 Aligned Residues 250 % Identity 17% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.							.	.	.	.	.	610	.	.		.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.									.																																											.
Query SS confidence																								.	.	.	.	.	.									.																																											.
Query Sequence		P	M	R	L	Q	Q	V	I	S	N	L	L	S	N	A	I	K	F	T	D	T	G	.	.	.	.	.	.	C	I	V	L	H	V	R	A	.	D	G	D	Y	L	S	I	R	V	R	D	T	G	V	G	I	P	A	K	E	V	V	R	L	F	D	P	F	F	Q	V	G	T	G	V	Q	R	N	F	Q	G	T	.
Query Conservation																								.	.	.	.	.	.									.																																											.
Alig confidence																								.	.	.	.	.	.									.																																											.
Template Conservation
Template Sequence		A	R	A	L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y
Template Known Secondary structure																		T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.		.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure																			.								.
Query SS confidence																			.								.
Query Sequence		G	L	G	L	A	I	C	E	K	L	I	S	M	M	D	G	D	.	I	S	V	D	S	E	P	.	G	M	G	S	Q	F	T	V	R	I	P	L	Y	G	A	Q	Y	P	Q	K	K	G	V	E	G	L	S	G	K	R	C	W	L	A	V	R	N	A	S	L	C	Q	F	L	E	T	S	L	Q	R	S	G	I	V
Query Conservation																			.								.
Alig confidence																			.								.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	G	V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S																								T	T		S											T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	Y	E	G	Q	E	P	T	P	E	D	V	L	I	T	D	E	V	V	S	K	K	W	Q	G	R	A	V	V	T	F	C	R	R	H	I	G	I	P	L	E	K	A	P	G	E	W	V	H	S	V	A	A	P	H	E	L	P	A	L	L	A	R	I	Y	L	I	E	M	E	S	D	D	P	A	N	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	E	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																													155	.	.	.	.
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.						.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																																								.
Query SS confidence																																					.	.	.	.	.																																								.
Query Sequence		P	S	T	D	K	A	V	S	D	N	D	D	M	M	I	L	V	V	D	D	H	P	I	N	R	R	L	L	A	D	Q	L	G	S	L	.	.	.	.	.	G	Y	Q	C	K	T	A	N	D	G	V	D	A	L	N	V	L	S	K	N	H	I	D	I	V	L	S	D	V	N	M	P	N	M	D	G	Y	R	L	.
Query Conservation																																					.	.	.	.	.																																								.
Alig confidence																																					.	.	.	.	.																																								.
Template Conservation
Template Sequence		S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I	K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	K	P	P	Q	E	V	K	P	H	P	Y	G	V	D	R	E
Template Known Secondary structure							S	S																																	T	T								T	T	S																							G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
			887	.	.	890	.	.	.	.			.	.	.	.	.	900	.	.	.	.					.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920		.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.
Predicted Secondary structure		.									.	.											.	.	.	.																	.
Query SS confidence		.									.	.											.	.	.	.																	.
Query Sequence		.	T	Q	R	I	R	Q	L	G	.	.	L	T	L	P	V	I	G	V	T	A	.	.	.	.	N	A	L	A	E	E	K	Q	R	C	L	E	S	G	M	D	.	S	C	L	S	K	P	V	T	L	D	V	I	K	Q	T	L	T	L	Y	A	E
Query Conservation		.									.	.											.	.	.	.																	.
Alig confidence		.									.	.											.	.	.	.																	.
Template Conservation
Template Sequence		E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I	K	E	F	L	V	N	E	F	Q	S	I	G	D	T	T	A	D	K	I	L	E	L	A	G	L	K	P	N	K	K	V	K	N	L	T	E	E	E	I	T	R	L	V	E	T	F	K	K
Template Known Secondary structure								T	T		S	S			B							T	T	S	T	T													T	T			S	S		B	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions