Job Description P14376 Confidence 94.25% Date Thu Jan 5 11:34:01 GMT 2012 Rank 262 Aligned Residues 80 % Identity 10% Template c2pdtD_ PDB info PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid Resolution 2.20 Å

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		366	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410																															.	.	.
Predicted Secondary structure												.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	V	G	I	C	I	L	R	T	.	.	A	D	G	V	N	I	L	S	N	E	L	A	H	T	Y	L	N	M	L	T	H	E	D	R	Q	R	L	T	Q	I	I	C	G	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	F
Query Conservation												.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	C	A	L	I	L	C	D	L	K	Q	K	D	T	P	I	V	Y	A	S	E	A	F	L	Y	M	T	G	Y	S	N	A	E	V	L	G	R	N	C	R	F	L	Q	S	P	D	G	M	V	K	P	K	S	T	R	K	Y	V	D	S	N	T	I	N	T	M	R	K	A	I	D	R	N	A	E	V	Q	V	E
Template Known Secondary structure		T	T	S	S						T	T	S	T	T																		S	T	T	T	T	T	S		G	G	G	G	G	S	T	T	S				T	T				S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		V	D	V	L	T	S	N	N	T	N	L	Q	I	S	F	V	H	S	R	Y	R	N	E	N	V	.	.	.	.	A	I	C	V	L	V	D
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		V	V	N	F	K	K	N	G	Q	R	F	V	N	F	L	T	M	I	P	V	R	D	E	T	G	E	Y	R	Y	S	M	G	F	Q	C	E
Template Known Secondary structure							T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions