Job Description P14376 Confidence 97.90% Date Thu Jan 5 11:34:01 GMT 2012 Rank 191 Aligned Residues 235 % Identity 10% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	S	E	I	R	Q	E	F	N	L	S	S	D	Q	A	Q	R	F	I	Q	R	T	S	D	V	M	K	E	L	K	Y	I	A	E	N	R	L	S	A	E	N	G	V	L	S	P	R	G	R	E	T	Q	A	D	V	P	A	F	E	P	L	F	A	D	S	D	C	S	A	M	S	N	T	W	R	G	S	L	E
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	E	N	T	A	K	E	A	L	H	Q	L	A	Y	T	G	R	E	Y	N	N	I	Q	D	Q	I	E	T	I	S	D	L	L	G	H	S	Q	S	L	Y	D	Y	L	R	E	P	S	K	A	N	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																					T										S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	W	F	M	R	Y	W	R	D	N	F	S	A	A	Y	D	L	N	R	V	F	L	I	G	S	D	N	L	C	M	A	N	F	G	L	R	D	M	P	V	E	R	D	T	A	L	K	A	L	H	E	R	I	N	K	Y	R	N	A	P	Q	D	D	S	G	S	N	L	Y	W	I	S	E	G	P	R	P	G
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	L	E	N	X	W	S	S	V	A	R	N	Q	K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E	K	V	R	I	K	Y	D	F	K	T	S	I	A	G	P	S	L	I	L	R	D	K	S	A	R	E	Y	F	K	Y	A	Q	S	L	D	N	E	Q	I	S	A	W	G	I	E	L	E	R	D
Template Known Secondary structure		.	.	.																								T	T	S	B									T	T	T	T										B		T	T	S								T	S		T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		204	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure				.	.	.	.	.	.	.	.																																					.	.																														.	.	.
Query SS confidence				.	.	.	.	.	.	.	.																																					.	.																														.	.	.
Query Sequence		V	G	.	.	.	.	.	.	.	.	Y	F	Y	A	L	T	P	V	Y	L	A	N	R	L	Q	A	L	L	G	V	E	Q	T	I	R	M	E	N	F	F	L	P	G	T	L	P	.	.	M	G	V	T	I	L	D	E	N	G	H	T	L	I	S	L	T	G	P	E	S	K	I	K	G	D	P	R	W	.	.	.
Query Conservation				.	.	.	.	.	.	.	.																																					.	.																														.	.	.
Alig confidence				.	.	.	.	.	.	.	.																																					.	.																														.	.	.
Template Conservation
Template Sequence		K	G	E	L	V	Y	P	L	S	P	S	L	R	I	L	X	P	I	S	V	N	D	V	R	Q	G	Y	L	V	L	N	V	D	I	E	Y	L	S	S	L	L	N	Y	S	P	V	R	D	F	H	I	E	L	V	K	H	K	G	F	Y	I	A	S	P	D	E	S	R	L	Y	G	D	I	I	P	E	R	S	Q	F
Template Known Secondary structure		T	T				S	S														T	T																				S			T	T	T	T								T	T	S	B					S		G	G	G	B	T	T	T	T	S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
																271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	E	R	S	W	F	G	Y	T	E	G	F	R	E	L	V	L	K	K	N	L	P	P	S	S	L	S	I	V	Y	S	V	P	V	D	K	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	S	N	X	Y	P	D	I	W	P	R	V	V	S	E	Q	A	G	Y	S	Y	S	G	E	H	L	I	A	F	S	S	I	K	F	V	S	N	E	P	L	H	L	I	I	D	L	S	N	E	Q	L
Template Known Secondary structure		B						T	T	T						T	T								S	S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions