Job Description P14376 Confidence 53.50% Date Thu Jan 5 11:34:01 GMT 2012 Rank 418 Aligned Residues 101 % Identity 18% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		823	.	.	.	.	.	.	830	.	.	.				.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.								.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.
Predicted Secondary structure													.	.	.																									.	.	.	.	.	.	.
Query SS confidence													.	.	.																									.	.	.	.	.	.	.
Query Sequence		D	D	M	M	I	L	V	V	D	D	H	.	.	.	P	I	N	R	R	L	L	A	D	Q	L	G	S	L	G	Y	Q	C	K	T	A	N	D	G	.	.	.	.	.	.	.	V	D	A	L	N	V	L	S	K	N	H	I	D	I	V	L	S	D	V	N	M	P	N	M	D	G	Y	R	L	T	Q	R	I	R	Q
Query Conservation													.	.	.																									.	.	.	.	.	.	.
Alig confidence													.	.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R
Template Known Secondary structure		T	T										S	S																T								T	T																		T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
						893	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.					.	.	.	920	.	.	.
Predicted Secondary structure		.	.	.	.																									.	.	.	.
Query SS confidence		.	.	.	.																									.	.	.	.
Query Sequence		.	.	.	.	L	G	L	T	L	P	V	I	G	V	T	A	N	A	L	A	E	E	K	Q	R	C	L	E	.	.	.	.	S	G	M	D	S	C	L
Query Conservation		.	.	.	.																									.	.	.	.
Alig confidence		.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V
Template Known Secondary structure									S								S	S	S		S													S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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