Job Description P14376 Confidence 79.24% Date Thu Jan 5 11:34:01 GMT 2012 Rank 319 Aligned Residues 113 % Identity 14% Template c2g1uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution Resolution 1.50 Å

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		821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.		.	.	870	.	.	.	.	.	.	.										.	.	880	.	.	.
Predicted Secondary structure																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Query SS confidence																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Query Sequence		D	N	D	D	M	M	I	L	V	V	D	D	H	P	I	N	R	R	L	L	A	D	Q	L	G	S	L	G	Y	Q	C	K	T	A	N	D	G	V	D	A	L	N	V	L	S	K	N	.	H	I	D	I	V	L	S	D	V	N	.	.	.	.	.	.	.	.	.	M	P	N	M	D	G	.	.	.	.	.	.	.
Query Conservation																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Alig confidence																							.																										.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		K	Q	K	S	K	Y	I	V	I	F	G	C	G	R	L	G	S	L	I	A	N	.	L	A	S	S	S	G	H	S	V	V	V	V	D	K	N	E	Y	A	F	H	R	L	N	S	E	F	S	G	F	T	V	V	G	D	A	A	E	F	E	T	L	K	E	C	G	M	E	K	A	D	M	V	F	A	F	T	N	D
Template Known Secondary structure		.												S									.					T	T								S		G	G	G	G	G	G	S		T	T			S					S		T	T	S						T	T	T	G	G	G		S						S	S
Template Predicted Secondary structure																							.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
						884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	R	L	T	Q	R	I	R	Q	L	G	L	T	L	P	V	I	G	V	T	A	N	A	L	A	E	E	K	Q	R	C	L	E	S	G	M	D	S	C	L	S	K	P	V	T	L	D	V	I	K	Q	T	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																					.	.
Template Conservation																										.	.
Template Sequence		D	S	T	N	F	F	I	S	M	N	A	R	Y	M	F	N	V	E	N	V	I	A	R	V	.	.	Y	D	P	E	K	I	K	I	F	E	E	N	G	I	K	T	I	C	P	A	V	L	M	I	E	K	V	K	E	F	I
Template Known Secondary structure															T	S			S							.	.	S	S	G	G	G						T	T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions