Job Description P31069 Confidence 99.63% Date Wed Jan 25 15:20:48 GMT 2012 Rank 16 Aligned Residues 229 % Identity 13% Template c2r9rH_ PDB info PDB header:membrane protein, transport protein Chain: H: PDB Molecule:paddle chimera voltage gated potassium channel kv1.2-kv2.1; PDBTitle: shaker family voltage dependent potassium channel (kv1.2-kv2.1 paddle2 chimera channel) in association with beta subunit Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	W	A	T	F	K	Q	T	A	T	N	L	W	V	T	L	R	H	D	I	L	A	L	A	V	F	L	N	G	L	L	I	F	K	T	I	Y	G	M	S	V	N	L	L	D	I	F	H	I	K	A	.	.	.	.	.	.	.	.	.	.	.	.	F	S	E	L	D	L	S	L	L	A	N	A	P	L	F	M	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	W	L	L	F	E	Y	P	E	S	S	G	P	A	R	I	I	A	I	V	S	V	M	V	I	L	I	S	I	V	S	F	C	L	E	T	L	P	I	F	R	D	E	F	H	T	Y	S	Q	S	T	I	G	Y	Q	Q	S	T	S	F	T	D	P	F	F	I	V	E	T	L	C	I	I	W	F	S	F	E	F	L
Template Known Secondary structure					T	T	T		T	T	S																									T	T						T											S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	F	L	V	L	N	S	I	G	L	L	F	R	A	K	L	A	W	A	I	S	I	I	L	L	L	I	A	L	I	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	F	Y	P	W	L	K	F	S	I	G	F	C	I	F	T	L	V	F	L	L	I	L	R	K	D	F	S	H
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	F	F	A	C	P	S	K	A	G	F	F	T	N	I	M	N	I	I	D	I	V	A	I	I	P	Y	Y	V	T	I	F	L	T	E	S	N	K	S	V	L	Q	F	Q	N	V	R	R	V	V	Q	I	F	R	I	M	R	I	L	R	I	F	K	L	S	R	H	S	K	G	L	Q	I	L	G	Q	T	L	K
Template Known Secondary structure							S	S		S	S	S	S	T	T	S									T	T												T	S		S						T	T											G	G	G	G	G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	A	A	G	T	I	F	A	F	I	S	F	T	T	L	L	F	Y	S	T	Y	G	A	L	Y	L	S	E	G	F	N	P	R	I	E	S	L	M	T	A	F	Y	F	S	I	E	T	M	S	T	V	G	Y	G	D	I	V	P	V	S	E	S	A	R	L	F	T	I	S	V	I	I	S	G	I	T	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	M	R	E	L	G	L	L	I	F	F	L	F	I	G	V	I	L	F	S	S	A	V	Y	F	A	E	A	D	E	R	D	S	Q	F	P	S	I	P	D	A	F	W	W	A	V	V	S	M	T	T	V	G	Y	G	D	M	V	P	T	T	I	G	G	K	I	V	G	S	L	C	A	I	A	G	V	L	T	I
Template Known Secondary structure			T																											T	T		T	T		S		S	S													T	T				S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	M	T	S	I	F	G	P	L	I	R	G	G	F	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	P	V	P	V	I	V	S	N	F	N	Y	F	Y	H	R	E
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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