Job Description P31125 Confidence 4.75% Date Thu Jan 5 11:47:10 GMT 2012 Rank 11 Aligned Residues 164 % Identity 9% Template c3rkoF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	K	Q	L	A	G	I	A	L	A	I	F	G	V	L	V	L	I	E	D	S	L	N	G	Q	H	V	A	M	L	G	F	M	L	T	L	A	A	A	F	S	W	A	C	G	N	I	F	N	K	K	I	M	S	H	S	T	R	P	A	V	M	S	L	V	I	W	S	A	L	I	P	I	I	P	F	F	V
Query Conservation
Alig confidence																						.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Sequence		M	E	F	A	F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	.	.	.	.	.	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	.	.	.	.	.	.	.	.	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F
Template Known Secondary structure																						.	.	.	.	.				S																						T	.	.	.	.	.	.	.	.	T											T
Template Predicted Secondary structure																						.	.	.	.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	I	L	D	G	S	A	T	M	I	H	S	L	V	T	I	D	M	T	T	I	L	S	L	M	Y	L	A	F	V	A	T	I	V	G	Y	G	I	W	G	T	L	L	G	R	Y	E	T	W	R	V	A	P	L	S	L	L	V	P	V	V	G	L	A	S	A	A	L	L	L	D	E	R	L	T	G	L	Q
Query Conservation
Alig confidence																																																																.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		V	F	V	V	M	M	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	G	I	D	G	T	P	I	S	A	K	A	V	.	.	.	.	.	G	I	T	L	F	G	P	Y	V	L	A	V	E
Template Known Secondary structure											S	S	T	T						T	T		S																							T	T	S																.	.	.	.	.					T	T	T	S
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.
		272	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		F	L	G	A	V	L	I	.	.	M	T	G	L	Y	I	N	V	F	G	L	R	W	R	K
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E
Template Known Secondary structure																								S	S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions