Job Description P31125 Confidence 0.79% Date Thu Jan 5 11:47:10 GMT 2012 Rank 94 Aligned Residues 211 % Identity 13% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	A	S	L	V	L	Q	A	Q	A	F	F	T	I	M	L	G	A	F	T	F	G	E	R	L	H	G	K	Q	L	A	G	I	A	L	A	I	F	G	V	L	V	L	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	L	N	G	Q	H	V	A	M	L	G	F	M	L	T	L
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M
Template Known Secondary structure									T	T																		T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	A	F	S	W	A	C	G	N	I	F	N	K	K	I	M	S	H	S	T	R	P	A	V	M	S	L	V	I	W	S	A	L	I	P	I	I	P	F	F	V	A	S	L	I	L	D	G	S	A	T	M	I	H	S	L	V	T	I	D	M	T	T	I	L	S	L	M	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S
Template Known Secondary structure																	T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
			219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.										.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		.	Y	L	A	F	V	A	T	I	V	G	Y	G	I	W	G	T	L	L	G	R	Y	E	T	W	R	V	A	P	L	S	L	L	V	P	V	V	G	L	A	S	A	A	L	L	L	D	E	R	L	T	.	.	.	.	.	.	.	.	.	G	L	Q	F	L	G	A	V	L	I	M	T	G	L	Y	I	N	V	F	G
Query Conservation		.																																																			.	.	.	.	.	.	.	.	.
Alig confidence		.																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L
Template Known Secondary structure																		T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		289	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	W	R	K	A	V	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	R	S	Q	Q	L	K	S
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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