Job Description P31125 Confidence 1.95% Date Thu Jan 5 11:47:10 GMT 2012 Rank 33 Aligned Residues 210 % Identity 10% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																			.	.	.	.	90	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	L	M	L	A	G	L	R	F	M	L	V	A	F	P	A	I	F	F	V	A	R	P	K	V	P	L	N	L	L	L	G	Y	G	L	T	I	S	F	A	Q	F	A	F	L	F	C	A	I	N	F	G	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	L	A	S	L	V
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	F	S	F	T	V	A	T	M	T	A	S	F	V	F	F	V	L	A	R	N	N	V	A	P	K	Y	R	I	S	M	M	V	S	A	L	V	V	F	I	A	G	Y	H	Y	F	R	I	T	S	S	W	E	A	A	Y	A	L	Q	N	G	M	Y	Q	P	T	G	E	L	F	N	D	A	Y	R	Y	V	D	W
Template Known Secondary structure																						G	G	G	S		G	G	G																												T					S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		L	Q	A	Q	A	F	F	T	I	M	L	G	A	F	T	F	G	E	R	L	.	.	.	.	H	G	K	Q	L	A	G	I	A	L	A	I	F	G	V	L	V	L	I	E	D	S	L	N	G	Q	H	V	A	M	L	G	F	M	L	T	L	A	A	A	F	S	W	A	C	G	N	I	F	N	K	K	I	M	S	H
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.
Template Conservation
Template Sequence		L	L	T	V	P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T
Template Known Secondary structure																S																														T		S				S	S	S																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	P	A	V	M	S	L	V	I	W	S	A	L	I	P	I	I	P	F	F	V	A	S	L	I	L	D	G	S	A	T	M	I	H	S	L	V	T	I	D	M	T	T	I	L	S	L	M	Y	L	A	F	V	A	T	I	V	G	Y	G	I	W	G	T	L	L	G	R	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	R	Q	S	S	R	V	S	T	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y	P	I	A	Y	M	I	P	M	A	N	T	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A	G	Y	G	V	L	I	Y	N	I	A	K	A	K	S	E
Template Known Secondary structure				T	S																												T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions