Job Description P31125 Confidence 0.80% Date Thu Jan 5 11:47:10 GMT 2012 Rank 93 Aligned Residues 207 % Identity 10% Template c3a7kD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:halorhodopsin; PDBTitle: crystal structure of halorhodopsin from natronomonas2 pharaonis Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	L	M	L	A	G	L	R	F	M	L	V	A	F	P	A	I	F	F	V	A	R	P	K	V	P	L	N	L	L	L	G	Y	G	L	T	I	S	F	A	Q	F	A	F	L	F	C	A	I	N	F	G	M	P	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	L	Y	I	N	I	A	L	A	G	L	S	I	L	L	F	V	F	M	T	R	G	L	D	D	P	R	A	K	L	I	A	V	S	T	I	L	V	P	V	V	S	I	A	S	Y	T	G	L	A	S	G	L	T	I	S	V	L	E	M	P	A	G	H	F	A	E	G	S	S	V	M	L	G	G	E	E	V	D
Template Known Secondary structure																						S	T	T																														T	T	T								T	T		T	T	T	T		B			S	S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
									88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	A	S	L	V	L	Q	A	Q	A	F	F	T	I	M	L	G	A	F	T	F	G	E	R	L	H	G	K	Q	L	A	G	I	A	L	A	I	F	G	V	L	V	L	I	E	D	S	L	N	G	Q	H	V	A	M	L	G	F	M	L	T	L	A	A	A	F	S	W	A	C	G	N	I
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																				.	.	.
Template Conservation																												.	.	.
Template Sequence		G	V	V	T	M	W	G	R	Y	L	T	W	A	L	S	T	P	M	I	L	L	A	L	G	L	L	.	.	.	A	G	S	N	A	T	K	L	F	T	A	I	T	F	D	I	A	M	C	V	T	G	L	A	A	A	L	T	T	S	S	H	L	M	R	W	F	W	Y	A	I	S	C	A	C	F	I	V	V	L	Y
Template Known Secondary structure		S					T																					.	.	.	T	T																												S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	K	K	I	M	S	H	S	T	R	P	A	V	M	S	L	V	I	W	S	A	L	I	P	I	I	P	F	F	V	A	S	L	I	L	D	G	S	A	T	M	I	H	S	L	V	T	I	D	M	T	T	I	L	S	L	M	Y	L	A	F	V	A	T	I	V	G	Y	G	I	W	G	T	L	L	G	R	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	V	E	W	A	Q	D	A	K	A	A	G	T	A	D	I	F	S	T	L	K	L	L	T	V	V	M	W	L	G	Y	P	I	V	W	A	L	G	V	E	G	V	A	V	L	P	V	G	Y	T	S	W	A	Y	S	A	L	D	I	V	A	K	Y	I	F	A	F	L	L	L	N	Y	L	T	S	N	E	G
Template Known Secondary structure					T										T																	T									S	T	T	T	T			S																	T															T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions