Job Description P31125 Confidence 2.69% Date Thu Jan 5 11:47:10 GMT 2012 Rank 18 Aligned Residues 211 % Identity 9% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.																					.	.	.	90
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	L	M	L	A	G	L	R	F	M	L	V	A	F	P	A	I	F	F	V	A	R	P	K	V	P	L	N	L	L	L	G	Y	G	L	T	I	S	F	A	Q	F	A	F	L	F	C	A	I	N	F	G	M	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	A	S
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	L	W	V	N	V	A	L	A	G	I	A	I	L	V	F	V	Y	M	G	R	T	I	R	P	G	R	P	R	L	I	W	G	A	T	L	M	I	P	L	V	S	I	S	S	Y	L	G	L	L	S	G	L	T	V	G	M	I	E	M	P	A	G	H	A	L	A	G	E	M	V	R	S	Q	W	G	R	Y	L
Template Known Secondary structure																						T	T	T			T	T																										T	T	T								T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	V	L	Q	A	Q	A	F	F	T	I	M	L	G	A	F	T	F	G	E	R	L	H	G	K	Q	L	A	G	I	A	L	A	I	F	G	V	L	V	L	I	E	D	S	L	N	G	Q	H	V	A	M	.	L	G	F	M	L	T	L	A	A	A	F	S	W	A	C	G	N	I	F	N	K	K	I	M	S	H	S
Query Conservation																																																						.
Alig confidence																		.	.	.																																		.
Template Conservation																		.	.	.
Template Sequence		T	W	A	L	S	T	P	M	I	L	L	A	L	G	L	L	.	.	.	A	D	V	D	L	G	S	L	F	T	V	I	A	A	D	I	G	M	C	V	T	G	L	A	A	A	M	T	T	S	A	L	L	F	R	W	A	F	Y	A	I	S	C	A	F	F	V	V	V	L	S	A	L	V	T	D	W	A	A	S	A
Template Known Secondary structure																		.	.	.	T	T																												S																									T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	P	A	V	M	S	L	V	I	W	S	A	L	I	P	I	I	P	F	F	V	A	S	L	I	L	D	G	S	A	T	M	I	H	S	L	V	T	I	D	M	T	T	I	L	S	L	M	Y	L	A	F	V	A	T	I	V	G	Y	G	I	W	G	T	L	L	G	R	Y	E	T	W	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	A	G	T	A	E	I	F	D	T	L	R	V	L	V	V	V	L	W	L	G	Y	P	I	V	W	A	V	G	V	E	G	L	A	L	V	Q	S	V	G	A	T	S	W	A	Y	S	V	L	D	V	F	A	K	Y	V	F	A	F	I	L	L	R	W	V	A	N	N	E	R	T	V	A	V
Template Known Secondary structure				T	T																										S	T	T	T	T		S	S																		T																				T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions