 |
Job Description | P0ADD5 | Confidence | 8.72% | Date | Thu Jan 5 11:20:41 GMT 2012 |
Rank | 63 | Aligned Residues | 63 |
% Identity | 13% | Template | c2pz0B_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:glycerophosphoryl diester phosphodiesterase; |
PDBTitle: crystal structure of glycerophosphodiester phosphodiesterase (gdpd)2 from t. tengcongensis
|
Resolution | 1.91 Å |
|
 |
  |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
. | . | . | . | . | . | . | . | 50 | . | . | . | |
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|  |  |  |  |  |  |
|
| . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | E | S | A | L | V | D | E | L | S | S | R | L | G | R | A | L | . |
. |
G | M | D | S | V | E | S | S | I | S | S | N | . |
. |
A | I | V | L | T | T | I | K | D | G | Q | C | L | T | S | T | R | K | N | H | D | R | G | I | N | M | H | V | V | T | E | V | Q |
Query Conservation |   |
|
|   |   |   |
|
|
|   |   |   |   |
|
|
|   |   |   | . | . |
|   |   |   |   |   |   |   |
|
|   |
| . | . |   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |
|
|
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |
|
|   |   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |
Template Sequence |   |
G | D | S | K | N | V | P | E | N | T | I | A | A | F | K | R | A | M | E | L | G | A | D | G | I | E | L | D | V | Q | L | T | K | D | G | H | L | V | V | I | H | D | E | T | V | D | R | T | T | N | G | E | G | F | V | K | D | F | T | L | E | E | I | K | K | L | D |
Template Known Secondary structure |   |
T | T | T | T | T | S |
| T | T | S |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |
| S | S | S | B | S | T | T | T | S | S |
|
| S | B | G | G | G | S |
|  |  |  |  | T | T | S |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|