Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	R	R	Q	P	L	I	P	G	W	L	I	P	G	V	S	A	T	T	L	V	V	A	V	A	L	A	A	F	L	A	L	W	W	N	A	P	Q	D	D	W	V	A	V	W	Q	D	S	Y	L	W	H	V	V	R	F	S	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	Q	A	F	L	S	A	L	L	S	V	I	P	A	I	F	L	A	R	A	L	Y	R	R	R	F	P	G	R	L	A	L	L	R	L	C	A	M	T	L	I	L	P	V	L	V	A	V	F	G	I	L	S	V	Y	G	R	Q	G	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	T	L	C	Q	S	L	G	L	E	W	T	F	S	P	Y	G	L	Q	G	I	L	L	A	H	V	F	F	N	L	P	M	A	S	R	L	L	L	Q	A	L	E	N	I	P	G	E	Q	R	Q	L	A	A	Q	L	G	M	R	S
Secondary structure
SS confidence
Disorder																																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		W	H	F	F	R	F	V	E	W	P	W	L	R	R	Q	I	P	P	V	A	A	L	I	F	M	L	C	F	A	S	F	A	T	V	L	S	L	G	G	G	P	Q	A	T	T	I	E	L	A	I	Y	Q	A	L	S	Y	D	Y	D	P
Secondary structure
SS confidence
Disorder																																										?	?	?													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	R	A	A	M	L	A	L	L	Q	M	V	C	C	L	G	L	V	L	L	S	Q	R	L	S	K	A	I	A	P	G	T	T	L	L	Q	G	W	R	D	P	D	D	R	L	H	S	R	I	C	D	T	V	L	I	V	L	A	L	L
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	L	L	P	P	L	L	A	V	I	V	D	G	V	N	R	Q	L	P	E	V	L	A	Q	P	V	L	W	Q	A	L	W	T	S	L	R	I	A	L	A	A	G	V	L	C	V	V	L	T	M	M	L	L	W	S	S	R	E	L	R
Secondary structure
SS confidence
Disorder																						?																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	R	Q	K	M	L	A	G	Q	V	L	E	M	S	G	M	L	I	L	A	M	P	G	I	V	L	A	T	G	F	F	L	L	L	N	N	T	I	G	L	P	Q	S	A	D	G	I	V	I	F	T	N	A	L	M	A	I	P	Y	A
Secondary structure
SS confidence
Disorder		?	?	?	?															?	?																		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	K	V	L	E	N	P	M	R	D	I	T	A	R	Y	S	M	L	C	Q	S	L	G	I	E	G	W	S	R	L	K	V	V	E	L	R	A	L	K	R	P	L	A	Q	A	L	A	F	A	C	V	L	S	I	G	D	F	G	V	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Sequence		A	L	F	G	N	D	D	F	R	T	L	P	F	Y	L	Y	Q	Q	I	G	S	Y	R	S	Q	D	G	A	V	T	A	L	I	L	L	L	L	C	F	L	L	F	T	V	I	E	K	L	P	G	R	N	V	K	T	D
Secondary structure
SS confidence
Disorder					?		?															?	?	?	?																									?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2r6g chain F Region: 68 - 524 Aligned: 435 Modelled: 437 Confidence: 100.0% Identity: 13% PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Phyre2 PDB 3d31 chain D Region: 9 - 262 Aligned: 247 Modelled: 254 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Phyre2 PDB 3d31 chain C domain 1 Region: 9 - 262 Aligned: 247 Modelled: 254 Confidence: 100.0% Identity: 19% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3fh6 chain F Region: 4 - 268 Aligned: 265 Modelled: 265 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Phyre2 PDB 2onk chain C domain 1 Region: 6 - 264 Aligned: 249 Modelled: 259 Confidence: 100.0% Identity: 22% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2onk chain C Region: 6 - 264 Aligned: 249 Modelled: 259 Confidence: 100.0% Identity: 22% PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Phyre2 PDB 2r6g chain F domain 2 Region: 40 - 260 Aligned: 221 Modelled: 221 Confidence: 100.0% Identity: 16% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2r6g chain G domain 1 Region: 4 - 276 Aligned: 263 Modelled: 273 Confidence: 99.9% Identity: 19% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3dhw chain A domain 1 Region: 52 - 262 Aligned: 200 Modelled: 211 Confidence: 99.8% Identity: 16% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1umq chain A Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 49.9% Identity: 16% PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity Phyre2 PDB 1umq chain A Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 49.9% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1ntc chain A Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 48.9% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1fip chain A Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 41.1% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 3e7l chain D Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 34.6% Identity: 13% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain Phyre2 PDB 1eto chain B Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 34.1% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1etx chain A Region: 157 - 187 Aligned: 31 Modelled: 31 Confidence: 30.3% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 2hx6 chain A Region: 422 - 447 Aligned: 26 Modelled: 26 Confidence: 29.5% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb Phyre2 PDB 1g2h chain A Region: 157 - 187 Aligned: 30 Modelled: 31 Confidence: 25.7% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 2jwa chain A Region: 57 - 90 Aligned: 34 Modelled: 34 Confidence: 14.5% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure Phyre2 PDB 3rko chain F Region: 3 - 89 Aligned: 83 Modelled: 87 Confidence: 12.0% Identity: 12% PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 1 c2r6gF_ 2 c3d31D_ 3 d3d31c1 4 c3fh6F_ 5 d2onkc1 6 c2onkC_ 7 d2r6gf2 8 d2r6gg1 9 d3dhwa1 10 c1umqA_ 11 d1umqa_ 12 d1ntca_ 13 d1fipa_ 14 c3e7lD_ 15 d1etob_ 16 d1etxa_ 17 c2hx6A_ 18 d1g2ha_ 19 c2jwaA_ 20 c3rkoF_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r6gF_ 100.0 13 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 2 c3d31D_ 100.0 19 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 3 d3d31c1 100.0 19 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 4 c3fh6F_ 100.0 16 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 5 d2onkc1 100.0 22 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 c2onkC_ 100.0 22 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 7 d2r6gf2 100.0 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 8 d2r6gg1 99.9 19 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 9 d3dhwa1 99.8 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 c1umqA_ 49.9 16 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 11 d1umqa_ 49.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 12 d1ntca_ 48.9 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 13 d1fipa_ 41.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 14 c3e7lD_ 34.6 13 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 15 d1etob_ 34.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 16 d1etxa_ 30.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 17 c2hx6A_ 29.5 15 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 18 d1g2ha_ 25.7 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 19 c2jwaA_ 14.5 24 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 20 c3rkoF_ 12.0 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 21 c2cw1A_ not modelled 9.6 27 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 22 c3mk7F_ not modelled 8.6 23 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 23 d2diia1 not modelled 8.5 11 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 24 c1pyuD_ not modelled 8.4 15 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 25 d1cf7a_ not modelled 8.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 26 c3s1bA_ not modelled 8.0 14 PDB header:signaling protein Chain: A: PDB Molecule:mini-z; PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis 27 c1loiA_ not modelled 8.0 33 PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures 28 c2diiA_ not modelled 8.0 11 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 29 d1v54g_ not modelled 7.8 9 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 30 c2d7dB_ not modelled 7.7 13 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 31 d1pf4a2 not modelled 7.5 14 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 32 d1st6a6 not modelled 7.4 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 33 c1twcF_ not modelled 7.3 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23 PDBTitle: rna polymerase ii complexed with gtp 34 d1twff_ not modelled 7.3 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 35 d1v54c_ not modelled 7.3 11 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 36 c2pmzW_ not modelled 7.1 14 PDB header:translation, transferase Chain: W: PDB Molecule:dna-directed rna polymerase subunit k; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 37 c2kncA_ not modelled 6.7 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 d2ns0a1 not modelled 6.6 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 39 c1vc3B_ not modelled 6.5 8 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 40 d1qkla_ not modelled 6.5 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 41 d2axtj1 not modelled 6.2 30 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 42 d1d5ya2 not modelled 6.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 43 c2l0kA_ not modelled 6.2 17 PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna 44 d2oy9a1 not modelled 6.1 9 Fold:BH2638-like Superfamily:BH2638-like Family:BH2638-like 45 c3plxB_ not modelled 6.1 15 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 46 c3h0gF_ not modelled 6.0 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 47 d1v54m_ not modelled 6.0 24 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 48 c3lk3T_ not modelled 5.9 30 PDB header:protein binding Chain: T: PDB Molecule:leucine-rich repeat-containing protein 16a; PDBTitle: crystal structure of capz bound to the cpi and csi uncapping2 motifs from carmil 49 c2l2tA_ not modelled 5.9 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 50 d1sjpa1 not modelled 5.7 13 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 51 c2oviA_ not modelled 5.6 4 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 52 d2auwa1 not modelled 5.6 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 53 d1h6gb1 not modelled 5.5 4 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 54 c2jz1A_ not modelled 5.5 10 PDB header:transcription Chain: A: PDB Molecule:protein doublesex; PDBTitle: dsx_long 55 d1ppya_ not modelled 5.5 15 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 56 c2vn2B_ not modelled 5.4 8 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 57 d1q3qa1 not modelled 5.4 15 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:Group II chaperonin (CCT, TRIC), ATPase domain 58 c1pt1B_ not modelled 5.4 15 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 59 c2lhuA_ not modelled 5.4 10 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 60 c2ks1B_ not modelled 5.3 17 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 61 d3fapb_ not modelled 5.3 8 Fold:Four-helical up-and-down bundle Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 62 c2kvlA_ not modelled 5.2 9 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 63 c3qkbB_ not modelled 5.2 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 64 c2l37A_ not modelled 5.2 18 PDB header:hydrolase Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1; PDBTitle: 3d solution structure of arginine/glutamate-rich polypeptide luffin p12 from the seeds of sponge gourd (luffa cylindrical) 65 c1ql1A_ not modelled 5.1 12 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 66 c1uheA_ not modelled 5.1 15 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 67 c2rddB_ not modelled 5.0 17 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 68 c2fomA_ not modelled 5.0 17 PDB header:viral protein/protease Chain: A: PDB Molecule:polyprotein; PDBTitle: dengue virus ns2b/ns3 protease 69 d1ku7a_ not modelled 5.0 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 70 c2e19A_ not modelled 5.0 9 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0