Return to main results Retrieve Phyre Job Id

Job DescriptionP31549
Confidence100.00%DateThu Jan 5 11:48:08 GMT 2012
Rank1Aligned Residues435
% Identity13%Templatec2r6gF_
PDB info PDB header:hydrolase/transport proteinChain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130.........140.......
Predicted Secondary structure 















Query SS confidence 















































































Query Sequence  LLSVIPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLATLCQSLGLEWTFSPYGLQGILLAHV
Query Conservation        
   
  
                 
   
  
            
     
                

    
Alig confidence 







































....................



















Template Conservation   
  
     
                             ....................         
   
 


  
Template Sequence  SVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIF. . . . . . . . . . . . . . . . . . . . ANRKAYAWRYVYPGMAGMGL
Template Known Secondary structure  TGGG
....................SSS

TT
Template Predicted Secondary structure  ....................
Template SS confidence 















































































   18.20.........30.........40.........50....... ..60.........70.......
 
   148.150.........160...... ...170.........180.........190.........200.........210.........220....
Predicted Secondary structure 

...








Query SS confidence 


















. . .

























































Query Sequence  FFNLPMASRLLLQALENIP. . . GEQRQLAAQLGMRSWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQAT
Query Conservation      
         
  
 ...    


   


       
 

   
 
     
 
            
       
Alig confidence 


















...




















































..


Template Conservation 
   
 


   
          






 

      
  
 


  
 
  
  

       
        ..   
Template Sequence  FVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFG. . GEQ
Template Known Secondary structure  TGGGB

SSTT
B
TT

S



TT
TTTT


B

S..S
Template Predicted Secondary structure 














..


Template SS confidence 















































































   78.80.........90.........100.........110.........120.........130.........140.........150.. ...
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  TIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLP
Query Conservation 

   

           
      

                                                     
Alig confidence 















































































Template Conservation 
                 

 
   
                                                      
Template Sequence  KLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIG
Template Known Secondary structure 
S

SS



T
SSS

SSS

S
TTS
TTT

TTTT
Template Predicted Secondary structure 























Template SS confidence 















































































   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   305....310.... .....320.........330.........340.........350.........360.........370.
Predicted Secondary structure  .............






Query SS confidence 









. . . . . . . . . . . . .
























































Query Sequence  PLLAVIVDGV. . . . . . . . . . . . . NRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQVL
Query Conservation 
         .............               
   

  
     
   
    
                  
Alig confidence 









.............
























































Template Conservation                       


 

            
      

  
     
        
              
Template Sequence  FYQSITANWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY
Template Known Secondary structure 




S
SS
B

B
TTTTTSGGGT
TTTSTTT
SSSTT
Template Predicted Secondary structure 

















Template SS confidence 















































































   236...240.........250.........260.........270.........280.........290.........300.........310.....
 
   372.......380.........390...... ...400.........410.........420.........430...
Predicted Secondary structure  ..................







Query SS confidence 
























. . . . . . . . . . . . . . . . . .




































Query Sequence  EMSGMLILAMPGIVLATGFFLLLNN. . . . . . . . . . . . . . . . . . TIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITA
Query Conservation       

  

 

           ..................           


       
            
  
Alig confidence 
























..................




































Template Conservation    
  

  

  
             
     
                    

        
       
 
  
  
Template Sequence  RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD
Template Known Secondary structure  TTS
T
SSSSTSS



TTTSGGGS
T
Template Predicted Secondary structure 
















Template SS confidence 















































































   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   434.....440.........450.........460.........470.........480...... ...490.........500.
Predicted Secondary structure 






............



Query SS confidence 




















































. . . . . . . . . . . .














Query Sequence  RYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGND. . . . . . . . . . . . DFRTLPFYLYQQIGS
Query Conservation   
 


  


        
 

   
 
     
 
           

   ............   

   
      
Alig confidence 




















































............














Template Conservation   
 


   


       
 


  
 
    

 
      
     
  


           
  
    
   
 
Template Sequence  DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE
Template Known Secondary structure  T


STTGGGTT

SS
SB
SS
SS

BSS

TS
Template Predicted Secondary structure 



















Template SS confidence 















































































   398.400.........410.........420.........430.........440.........450.........460.........470.......
 
   502 .......510.........520....
Predicted Secondary structure 
....
Query SS confidence 
. . . .





















Query Sequence  Y. . . . RSQDGAVTALILLLLCFLLFTV
Query Conservation   ....    


 
 

  
       
Alig confidence 
....





















Template Conservation         
 


 
 
   
   
  
Template Sequence  GGGGQDFGLAAAIATLIFLLVGALAIV
Template Known Secondary structure  SSS



Template Predicted Secondary structure 







Template SS confidence 


























   478.480.........490.........500....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions