Return to main results Retrieve Phyre Job Id

Job DescriptionQ9JMS7
Confidence3.91%DateThu Jan 5 12:38:03 GMT 2012
Rank57Aligned Residues16
% Identity19%Templatec2xi1A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   174.....180.........
Predicted Secondary structure 








Query SS confidence 















Query Sequence  GSIDGIFVGETGDKII
Query Conservation     

 
   
    
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Template Conservation 





 

 

  

Template Sequence  GGLEGLVYSQREKEIL
Template Known Secondary structure  STTTT
B

Template Predicted Secondary structure 






Template SS confidence 















   95....100.........110
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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