Job Description Q9JMS7 Confidence 19.69% Date Thu Jan 5 12:38:03 GMT 2012 Rank 5 Aligned Residues 92 % Identity 14% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	R	T	I	N	E	M	S	S	Y	T	P	H	M	K	V	N	R	I	A	E	R	L	S	K	V	Q	K	I	S	F	C	I	S	V	I	S	F	F	L	L	A	I	I	T	L	T	Y	G	P	F	N	T	K	S	N	L	S	F	I	S	A	L	S	L	Y	F	I	N	V	I	M	G	V	T	Y	L	S	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																			.	.																												.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																			.	.																												.	.	.	.
Template Sequence		V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	.	.	.	.	.	.	.	.	.	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	.	.	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	.	.	.	.
Template Known Secondary structure							T	T	T	T		S	S									.	.	.	.	.	.	.	.	.																	G	G	.	.	G																											.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																			.	.																												.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.										.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.			.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	N	T	I	K	Y	I	Y	N	F	K	G	E	V	V	N	E	L	I	Y	D	I	D	S	D	E	Q	H	I	E	A	L	L	P	Y	S	L	E	E	L	T	Y	V	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions