Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
Sequence		M	K	K	F	R	W	V	V	L	V	V	V	V	L	A	C	L	L	L	W	A	Q	V	F	N	M	M	C	D	Q	D	V	Q	F	F	S	G	I	C	A	I	N	Q	F	I	P	W
Secondary structure
SS confidence
Disorder		?	?	?	?																																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bbn chain B Region: 35 - 44 Aligned: 10 Modelled: 10 Confidence: 16.7% Identity: 40% PDB header:calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase; PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr Phyre2 PDB 2bbm chain B Region: 35 - 44 Aligned: 10 Modelled: 10 Confidence: 16.7% Identity: 40% PDB header:calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase; PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr Phyre2 PDB 3bq9 chain A Region: 33 - 42 Aligned: 10 Modelled: 10 Confidence: 10.0% Identity: 50% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 Phyre2 PDB 3gh1 chain A Region: 33 - 42 Aligned: 10 Modelled: 10 Confidence: 9.7% Identity: 50% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae Phyre2 1 c2bbnB_ 2 c2bbmB_ 3 c3bq9A_ 4 c3gh1A_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbnB_ 16.7 40 PDB header:calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase; PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr 2 c2bbmB_ 16.7 40 PDB header:calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase; PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr 3 c3bq9A_ 10.0 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 4 c3gh1A_ 9.7 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0