Job Description P0AG71 Confidence 11.39% Date Thu Jan 5 11:28:16 GMT 2012 Rank 71 Aligned Residues 335 % Identity 9% Template c2oexB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Resolution 2.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	R	M	E	A	A	Q	Q	H	A	D	D	K	I	R	Q	M	I	N	S	E	Q	R	L	S	E	Q	F	E	N	L	A	N	R	I	F	E	H	S	N	R	R	V	D	E	Q	N	R	Q	S	L	N	S	L	L	S	P	L	R	E	Q	L	D	G	F	R	R	Q	V	Q	D	S	F	G	K	E	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	Q	S	L	A	A	Y	N	Q	R	K	A	D	L	V	N	R	S	I	A	Q	X	R	E	A	T	T	L	A	N	G	V	L	A	S	L	N	L	P	A	A	I	E	D	V	S	G	D	T	V	P	Q	S	I	L	T	K	S	R	S	V	I	E	Q	G	G	I	Q	T	V	D	Q	L	I	K	E	L	P	E
Template Known Secondary structure																																						T	T	T	T	G	G	G	G			S	T	T	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	H	T	L	T	H	E	I	R	N	L	Q	Q	L	N	A	Q	M	A	Q	E	A	I	N	L	T	R	A	L	K	G	D	N	K	T	Q	G	N	W	G	E	V	V	L	T	R	V	L	E	A	S	G	L	R	E	G	Y	E	Y	E	T	Q	V	S	I	E	N	D	A	R	S	R	M	Q	P	D	V	I	V
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	.	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V
Template Known Secondary structure																															S	S	T	T			S				.				T																														T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.		.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	Q	G	K	D	V	V	I	D	A	K	M	T	L	V	A	Y	E	R	Y	F	N	A	E	D	D	Y	T	R	E	S	A	L	Q	E	H	I	A	S	V	R	N	H	I	R	L	L	G	R	K	D	Y	Q	Q	L	P	G	L	R	T	L	D	Y	V	L	M	F	I	P	V	E	P	A	F	L	L	A	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		L	L	C	K	P	E	P	E	.	L	N	A	A	I	P	S	A	N	P	A	K	T	X	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	X	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S
Template Known Secondary structure				T	S					.			T	T	S							T	T	T	T	T																														T																S	S	S
Template Predicted Secondary structure										.
Template SS confidence
		522	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	Q	P	E	L	I	T	E	A	L	K	N	N	I	M	L	V	S	P	T	T	L	L	V	A	L	R	T	I	A	N	L	W	R	Y	E	H	Q	S	R	N	A	Q	Q	I	A	D	R	A	S	K	L	Y	D	K	M	R	L	F	I	D	D	M	S	A	I	G	Q	S	L	D	K	A	Q	D	N	Y	R	Q
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	X	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	.	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E
Template Known Secondary structure									T																													T	T	T	S															.
Template Predicted Secondary structure																																																								.
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	K	K	L	S	S	G	R	G	N	V	L	A	Q	A	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I	V	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions