Job Description P0AG71 Confidence 32.91% Date Thu Jan 5 11:28:16 GMT 2012 Rank 43 Aligned Residues 431 % Identity 8% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.																																											.	.	.
Query SS confidence																															.	.	.	.	.	.																																											.	.	.
Query Sequence		Q	H	A	Q	Q	K	A	E	Q	L	A	E	R	E	E	M	V	A	E	L	S	A	A	K	Q	Q	I	T	Q	.	.	.	.	.	.	S	E	H	W	R	A	E	C	E	L	L	N	N	E	V	R	S	L	Q	S	I	N	T	S	L	E	A	D	L	R	E	V	T	T	R	M	E	A	A	Q	Q	H	.	.	.
Query Conservation																															.	.	.	.	.	.																																											.	.	.
Alig confidence																															.	.	.	.	.	.																																											.	.	.
Template Conservation
Template Sequence		E	N	E	Q	L	M	E	D	Y	E	K	L	A	S	D	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	A	P	E	N	T	M	Q	A	M	Q	Q	K	L	E	D	F	R	D	Y	R	R	L	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	L	S	N	R
Template Known Secondary structure																																			S	S																		T																						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
															97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	D	K	I	R	Q	M	I	N	S	E	Q	R	L	S	E	Q	F	E	N	L	A	N	R	I	F	E	H	S	N	R	R	V	D	E	Q	N	R	Q	S	L	N	S	L	L	S	P	L	R	E	Q	L	D	G	F	R	R	Q	V	Q	D	S	F	G	K	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	F	M	P	S	E	G	K	M	V	S	D	I	N	N	A	W	G	G	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	D	H	L	A	E	K	F	R	Q	K	A	S	I	H	E	S	W	T	D	G	K	E	A	M	L	Q	Q	K	D	Y	E	T	A	T	L	S	E	I
Template Known Secondary structure							S	S	T	T		T	T	T												T	T	T																																T	T	T	T						T	S		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	E	R	H	T	L	T	H	E	I	R	N	L	Q	Q	L	N	A	Q	M	A	Q	E	A	I	N	L	T	R	A	L	K	G	D	N	K	T	Q	G	N	W	G	E	V	V	L	T	R	V	L	E	A	S	G	L	R	E	G	Y	E	Y	E	T	Q	V	S	I	E	N	D	A	R	S	R	M	Q	P	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	L	L	K	K	H	E	A	F	E	S	D	L	A	A	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q	L
Template Known Secondary structure																T	T																	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	R	L	P	Q	G	K	D	V	V	I	D	A	K	M	T	L	V	A	Y	E	R	Y	F	N	A	E	D	D	Y	T	R	E	S	A	L	Q	E	H	I	A	S	V	R	N	H	I	R	L	L	G	R	K	D	Y	Q	Q	L	P	G	L	R	T	L	D	Y	V	L	M	F	I	P	V	E	P	A	F	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	E	Y	A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T	N
Template Known Secondary structure									T	T	T	T	T										T	T						S	S																	T																								T	T	T			S		S
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	R	Q	P	E	L	I	T	E	A	L	K	N	N	I	M	L	V	S	P	T	T	L	L	V	A	L	R	T	I	A	N	L	W	R	Y	E	H	Q	S	R	N	A	Q	Q	I	A	D	R	A	S	K	L	Y	D	K	M	R	L	F	I	D	D	M	S	A	I	G	Q	S	L	D	K	A	Q	D	N	Y
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	T	I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L	V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K	Q	F	G	A	Q	A	N	V	I	G	P	W	I	Q	T	K	M	E	E	I
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S																													T	T																													T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		592																		.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.												.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	A	M	K	K	L	S	S	G	R	G	N	V	L	A	Q	A	E	A	F	R	G	L	G	V	E	I	K	R	E	I	N	P	D	L	A	E	Q	A	V	S	Q	D	.	.	.	.	.	.	.	.	.	.	.	E	E	Y	R	L	R	S	V	P	E	Q	P	N	D	E	A	Y	Q	R	D	D	E	Y	N	Q
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	I	S	I	E	M	H	G	T	L	E	D	Q	L	N	H	L	R	Q	Y	E	K	S	I	V	N	Y	K	P	K	I	D	Q	L	E	G	D	H	Q	Q	I	Q	E	A	L	I	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	Q	L	L	T	T	I	A	R	T	I	N	E	V	E	N
Template Known Secondary structure		T	S	S	T	T		S	S	S	S	S																		T															T	T	T					S	S		S
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		473
Predicted Secondary structure
Query SS confidence
Query Sequence		Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		735