Job Description P0AG71 Confidence 45.21% Date Thu Jan 5 11:28:16 GMT 2012 Rank 38 Aligned Residues 422 % Identity 12% Template c1hciB_ PDB info PDB header:triple-helix coiled coil Chain: B: PDB Molecule:alpha-actinin 2; PDBTitle: crystal structure of the rod domain of alpha-actinin Resolution 2.8 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	Y	Q	H	A	Q	Q	K	A	E	Q	L	A	E	R	E	E	M	V	A	E	L	.	.	.	.	.	.	.	.	.	S	A	A	K	Q	Q	I	T	Q	S	E	H	W	R	A	E	C	E	L	L	N	N	E	V	R	S	L	Q	S	I	N	T	S	L	E	A	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	E	E	Y	E	R	L	A	S	E	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	T	P	E	K	T	M	Q	A	M	Q	K	K	L	E	D	F	R	D	Y	R	R	K	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	I	S	N	R	P	A	F	M
Template Known Secondary structure															T									T	T						S	S	S	T	T	T	T													T											T	T	T					T	T	T	T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
											83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	R	E	V	T	T	R	M	E	A	A	Q	Q	H	A	D	D	K	I	R	Q	M	I	N	S	E	Q	R	L	S	E	Q	F	E	N	L	A	N	R	I	F	E	H	S	N	R	R	V	D	E	Q	N	R	Q	S	L	N	S	L	L	S	P	L	R	E	Q	L	D	G	F	R
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	E	G	K	M	V	S	D	I	A	G	A	W	Q	R	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	E	H	L	A	E	K	F	R	Q	K	A	S	T	H	E	T	W	A	Y	G	K	E	Q	I	L	L	Q	K	D	Y	E	S	A	S	L	T	E	V	R	A	L	L
Template Known Secondary structure				G	G	G		S	S	S													T	T																																		T	T									G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	Q	D	S	F	G	K	E	A	Q	E	R	H	T	L	T	H	E	I	R	N	L	Q	Q	L	N	A	Q	M	A	Q	E	A	I	N	L	T	R	A	L	K	G	D	N	K	T	Q	G	N	W	G	E	V	V	L	T	R	V	L	E	A	S	G	L	R	E	G	Y	E	Y	E	T	Q	V	S	I	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	H	E	A	F	E	S	D	L	A	A	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	H	D	A	V	N	V	N	D	R	C	Q	K	I	C	D	Q	W	D	R	L	G	T	L	T	Q	K	R	R	E	A	L	E	R	M	E	K	L	L	E	T	I	D	Q	L	H	L	E	F
Template Known Secondary structure																															T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		D	A	R	S	R	M	Q	P	D	V	I	V	R	L	P	Q	G	K	D	V	V	I	D	A	K	M	T	L	V	A	Y	E	R	Y	F	N	A	E	D	D	Y	T	R	E	S	A	L	Q	E	H	I	A	S	V	R	N	H	I	R	L	L	G	R	K	D	Y	Q	Q	L	P	G	L	R	T	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	M	F	I	V	H	S	I	E	E	I	Q	S	L	I	T	A	H	E	Q	F	K	A	T	L	P	E	A	D	G	E	R	Q	S	I	M	A	I	Q	N	E	V	E	K	V	I	Q	S	Y	N	I	R	I	S	S	S	N	P	Y	S	T
Template Known Secondary structure																			T	T						S	S																																									T	T	T			S		S			T	T		S
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
				308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	D	Y	V	L	M	F	I	P	V	E	P	A	F	L	L	A	L	D	R	Q	P	E	L	I	T	E	A	L	K	N	N	I	M	L	V	S	P	T	T	L	L	V	A	L	R	T	I	A	N	L	W	R	Y	E	H	Q	S	R	N	A	Q	Q	I	A	D	R	A	S	K	L	Y	D	K	M	R	L	F
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		V	T	M	D	E	L	R	T	K	W	D	K	V	K	Q	L	V	P	I	R	D	Q	S	L	Q	E	E	L	A	R	Q	H	A	N	E	R	L	R	R	Q	F	A	A	Q	A	N	A	I	G	P	W	I	Q	N	K	M	E	E	I	A	R	S	S	I	Q	I	T	G	A	L	E	D	Q	M	N	Q	L	K	Q	Y
Template Known Secondary structure		S																																																												S		S		T	T	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	D	M	S	A	I	G	Q	S	L	D	K	A	Q	D	N	Y	R	Q	A	M	K	K	L	S	S	G	R	G	N	V	L	A	Q	A	E	A	F	R	G	L	G	V	E	I	K	R	E	I	N	P	D	L	A	E	Q	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	N	I	I	N	Y	K	N	N	I	D	K	L	E	G	D	H	Q	L	I	Q	E	A	L	V	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	L	L	L	T	T	I	A	R	T	I	N	E	V	E	T
Template Known Secondary structure																									T	T					T	T		S
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740