Job Description P0AG71 Confidence 5.84% Date Thu Jan 5 11:28:16 GMT 2012 Rank 96 Aligned Residues 230 % Identity 7% Template c1f5nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	R	S	R	M	Q	P	D	V	I	V	R	L	P	Q	G	K	D	V	V	I	D	A	K	M	T	L	V	A	Y	E	R	Y	F	N	A	E	D	D	Y	T	R	E	S	A	L	Q	E	H	I	A	S	V	R	N	H	I	R	L	L	G	R	K	D	Y	Q	Q	L	P	G	L	R	T	L	D	Y	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	L	H	R	D	S	E	R	E	A	I	E	V	F	I	R	S	S	F	K	D	V	D	H	L	F	Q	K	E	L	A	A	Q	L	E	K	K	R	D	D	F	C	K	Q	N	Q	E	A	S	S	D	R	C	S	G	L	L	Q	V	I	F	S	P	L	E	E	E	V	K	A	G	I	Y	S	K	P	G	G	Y
Template Known Secondary structure																								G	G	G																																														T	T	T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	I	P	V	E	P	A	F	L	L	A	L	D	R	Q	P	E	L	I	T	E	A	L	K	N	N	I	M	L	V	S	P	T	T	L	L	V	A	L	R	T	I	A	N	L	W	R	Y	E	H	Q	S	R	N	A	Q	Q	I	A	D	R	A	S	K	L	Y	D	K	M	R	L	F	I	D	D	M	S	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	F	V	Q	K	L	Q	D	L	K	K	K	Y	Y	E	E	P	R	K	G	I	Q	A	E	E	I	L	Q	T	Y	L	K	S	K	E	S	M	T	D	A	I	L	Q	T	D	Q	T	L	T	E	K	E	K	E	I	E	V	E	R	V	K	A	E	S	A	Q	A	S	A	K	M	L	H	E	M	Q	R	K	N
Template Known Secondary structure																		S	S				T	T												T												S	S	S
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	S	L	D	K	A	Q	D	N	Y	R	Q	A	M	K	K	L	S	S	G	R	G	N	V	L	A	Q	A	E	A	F	R	G	L	G	V	E	I	K	R	E	I	N	P	D	L	A	E	Q	A	V	S	Q	D	E	E	Y	R	L	R	S	V	P	E	Q	P	N	D	E	A
Query Conservation
Alig confidence																																												.
Template Conservation																																												.
Template Sequence		E	Q	M	M	E	Q	K	E	R	S	Y	Q	E	H	L	K	Q	L	T	E	K	M	E	N	D	R	V	Q	L	L	K	E	Q	E	R	T	L	A	L	K	L	Q	.	E	Q	E	Q	L	L	K	E	G	F	Q	K	E	S	R	I	M	K	N	E	I	Q	D	L	Q	T	K	M
Template Known Secondary structure																																												.									T
Template Predicted Secondary structure																																												.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.		.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions