Job Description P0A9I1 Confidence 100.00% Date Thu Jan 5 11:10:18 GMT 2012 Rank 2 Aligned Residues 292 % Identity 17% Template c3pugA_ PDB info PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.									.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.													.
Predicted Secondary structure																																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	R	K	T	R	T	R	R	S	M	L	F	V	P	G	A	N	A	A	M	V	S	N	S	F	I	Y	P	A	.	.	.	.	.	.	.	.	D	A	L	M	F	D	L	E	D	S	V	A	L	R	E	K	D	T	A	R	R	M	V	Y	H	A	L	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	H	D	R	E	F	V	R	T	F	F	T	S	P	T	A	V	E	D	D	S	A	K	M	L	R	R	A	A	G	L	R	G	M	Q	A	P	D	V	W	V	P	D	N	E	D	A	T	A	P	S	M	R	D	E	G	A	E	N	I	V	E	V	I	S	E	Q	G	A	E	F	P	G	E	I	H	P	R	M
Template Known Secondary structure				S	S		S										S						T	T							T	T			G	G	G	S		S						S	S	T	T	S		G	G	G																G	G	G			S					B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	D	I	E	T	I	V	R	V	N	A	L	D	S	E	W	G	V	N	D	L	E	A	V	V	R	G	G	A	D	V	V	R	L	P	K	T	D	T	A	Q	D	V	L	D	I	E	K	E	I	L	R	I	E	K	A	C	G	R	E	P	G	S	T	G	L	L	A	A	I	E	S	P	L	G	I	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	H	R	D	S	P	E	T	R	Y	Q	G	F	Q	H	M	L	D	I	T	D	P	E	R	G	A	V	E	H	I	H	G	F	V	I	P	E	V	G	G	I	D	D	W	K	K	A	D	E	F	F	T	I	V	E	H	E	H	G	L	D	E	G	S	L	A	M	S	V	I	I	E	S	G	E	A	E	L	A
Template Known Secondary structure					T	T																T		G	G	G	S		G	G	G								S			S																		T	T			T	T		S								S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		147	.	.	150	.								.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																													.
Query SS confidence							.	.	.	.	.	.	.																													.
Query Sequence		A	V	E	I	A	.	.	.	.	.	.	.	H	A	S	E	R	L	I	G	I	A	L	G	A	E	D	Y	V	R	N	L	R	T	E	R	S	P	E	G	.	T	E	L	L	F	A	R	C	S	I	L	Q	A	A	R	S	A	G	I	Q	A	F	D	T	V	Y	S	D	A	N	N	E	A	G	F	L	Q	E	A
Query Conservation							.	.	.	.	.	.	.																													.
Alig confidence							.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		M	G	D	L	R	D	E	M	G	K	P	T	N	N	L	E	R	L	F	L	L	V	D	G	E	V	D	Y	T	K	D	M	R	A	M	T	P	T	G	E	L	P	A	W	P	E	L	R	H	N	T	S	R	G	A	S	A	A	G	C	V	A	V	D	G	P	Y	D	D	I	R	D	V	E	G	Y	R	E	R	M
Template Known Secondary structure		G	G	G					T	T	S	T	T			G	G	G															T	T				S	S																					T											T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	H	I	K	Q	L	G	F	D	G	K	S	L	I	N	P	R	Q	I	D	L	L	H	N	L	Y	A	P	T	Q	K	E	V	D	H	A	R	R	.	V	V	E	A	A	E	A	A	A	R	E	G	L	G	V	V	S	L	N	G	K	M	V	D	G	P	V	I	D	R	A	R	L	V	L	S	R	A	E	L	S
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		T	D	N	Q	A	K	G	M	L	G	I	W	S	L	T	P	G	Q	V	V	E	A	N	T	S	P	L	P	P	K	T	G	S	W	L	L	D	E	E	L	L	G	L	T	S	Y	V	P	S	M	D	D	I	V	D	S	M	E	E	F	E	W	D	E	A	T	Y	Q	A	A	M	T	P	I	S	L	F	Q	D	V
Template Known Secondary structure						T	T	T							S	S										T	T	S			S	S									S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		298
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		406

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions