Job Description P0A9I1 Confidence 99.25% Date Thu Jan 5 11:10:18 GMT 2012 Rank 43 Aligned Residues 217 % Identity 18% Template c1vbhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		L	F	V	P	G	A	N	A	A	M	V	S	N	S	F	I	Y	P	A	D	A	L	M	F	D	L	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	L	R	E	K	D	T	A	R	R	M	V	Y	H	A	L	Q	H	P	.	.	.	.	.	.	L	Y	R	D	I	E	T
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	A	N	A	D	T	P	D	D	A	L	T	A	R	N	N	G	A	Q	G	I	G	L	C	R	T	E	H	M	F	F	A	S	D	E	R	I	K	A	V	R	Q	M	I	M	A	P	T	L	E	L	R	Q	Q	A	L	D	R	L	L	P	Y	Q	R	S	D	F	E	G	I	F	R	A	M	D	G	L	P	V
Template Known Secondary structure								S										T	T			S						G	G	G	G	T	T	T															S	S																										T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.																																																						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		I	V	R	V	N	A	L	D	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	G	V	N	D	L	E	A	V	V	R	G	G	A	D	V	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		T	I	R	L	L	D	P	P	L	H	E	F	L	P	E	G	N	I	E	D	I	V	S	E	L	C	A	E	T	G	A	N	Q	E	D	A	L	A	R	I	E	K	L	S	E	V	N	P	M	L	G	F	R	G	C	R	L	G	I	S	Y	P	E	L	T	E	M	Q	A	R	A	I	F	E	A	A	I	A	M	T
Template Known Secondary structure								S		G	G	G	G	S			S																														S		G	G	G	S	S		T
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	R	L	P	K	T	D	T	A	Q	D	V	L	D	I	E	K	E	I	L	R	I	E	K	A	C	.	.	.	G	R	E	P	G	S	T	G	L	L	A	A	I	E	S	P	L	G	I	T	R	A	V	E	I	A	H	A	S	E	R	L	I	G	I	A	L	G	A	E	D	Y
Query Conservation		.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																											.	.	.																													.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		N	Q	G	V	Q	V	F	P	E	I	M	V	P	L	V	G	T	P	Q	E	L	G	H	Q	V	T	L	I	R	Q	V	A	E	K	V	F	A	N	V	G	K	T	I	G	Y	K	V	G	T	M	I	E	I	P	R	A	A	L	V	A	D	E	I	A	E	Q	.	.	.	A	E	F	F	S	F	G	T	N	D	L
Template Known Secondary structure		T	T	T											S			S																						T	T													S						T					T	T	T	.	.	.		S
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.				.	.	.	.	.	770	.	.	.	.	.
		168	.		170	.	.	.	.	.	.																.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																	.	.
Query SS confidence				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																	.	.
Query Sequence		V	R	.	N	L	R	T	E	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	G	T	.	.	.	.	.	.	.	E	L	L	F	A	R	C	S	I	L	Q	A	A	R	S	A	.	.	G	I	Q	A	F	D	T	V	Y	S	D	A	N	N	E	A	G	F	L	Q	E	A	A	H	I	K
Query Conservation				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																	.	.
Alig confidence				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.																	.	.					.	.													.	.	.
Template Conservation																																																												.	.													.	.	.
Template Sequence		T	Q	M	T	F	G	Y	S	R	D	D	V	G	K	F	I	P	V	Y	L	A	Q	G	I	L	Q	H	D	P	F	E	V	L	D	Q	R	G	V	G	E	L	V	K	F	A	T	E	R	G	R	K	A	R	P	N	L	K	V	.	.	G	I	C	G	E	H	G	G	E	P	S	S	.	.	.	V	A	F	F	A
Template Known Secondary structure							T							T	T	T							T	T	S		S	S		T	T	T	S			T	T	T																S	T	T				.	.				S	G	G	G	G					.	.	.
Template Predicted Secondary structure																																																												.	.													.	.	.
Template SS confidence
		776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.			.	.	.	.	.	.	840	.	.	.	.	.				.	.	.	.	850
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	F	D	G	K	S	L	I	N	P	R	Q	I	D	L	L	H	N	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		K	A	G	L	D	Y	V	S	C	S	.	P	F	R	V	P	I	A	R	L	A
Template Known Secondary structure				T		S						.	G	G	G
Template Predicted Secondary structure												.
Template SS confidence
		851	.	.	.	.	.	.	.	.	860		.	.	.	.	.	.	.	.	.	870

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions