Job Description P39364 Confidence 24.96% Date Thu Jan 5 11:59:55 GMT 2012 Rank 382 Aligned Residues 230 % Identity 20% Template c3qw4B_ PDB info PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	W	L	K	E	V	I	G	T	E	K	A	V	I	A	M	C	H	L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	A
Query Conservation
Alig confidence																						.	.	.	.	.							.	.	.																		.								.	.	.	.
Template Conservation																						.	.	.	.	.							.	.	.																		.								.	.	.	.
Template Sequence		M	S	F	F	D	L	L	N	E	R	A	K	R	S	L	L	C	V	G	L	.	.	.	.	.	D	P	R	A	K	T	.	.	.	A	A	A	A	V	E	E	C	K	R	L	I	E	Q	T	H	E	.	Y	A	A	A	Y	K	P	.	.	.	.	N	A	A	F	F	E	F	F	G	A	E	G	W	A	A	L	S
Template Known Secondary structure												T	T	T								.	.	.	.	.					S	S	.	.	.																G	G	.	G		S					.	.	.	.	B						T	T
Template Predicted Secondary structure																						.	.	.	.	.							.	.	.																		.								.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P	E
Query Conservation
Alig confidence										.	.																								.	.	.	.	.	.	.	.																																		.	.
Template Conservation										.	.																								.	.	.	.	.	.	.	.																																		.	.
Template Sequence		E	V	I	R	A	V	P	A	.	.	G	I	P	V	V	L	D	A	K	R	G	D	I	A	D	T	A	D	A	Y	A	T	S	.	.	.	.	.	.	.	.	A	F	K	H	L	N	A	H	A	I	T	A	S	P	Y	M	G	S	D	S	L	Q	P	F	M	R	Y	P	D	K	A	V	F	.	.	V	L	C	K
Template Known Secondary structure						T	S		T	.	.	T	S		B																				.	.	.	.	.	.	.	.			T	T	S			S						S	T	T										T		T	T	S				.	.
Template Predicted Secondary structure										.	.																								.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		68	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.
		161	.	.	.	.	.	.														.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Query Sequence		A	A	V	Y	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	.	.	.	.	.	C	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																						.				.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.																						.
Template Sequence		T	S	N	K	G	S	N	D	L	Q	C	L	R	V	G	D	R	Y	L	Y	E	A	V	A	E	R	A	E	G	P	W	N	V	N	G	N	V	G	L	V	V	G	.	.	.	.	.	.	A	T	D	P	V	A	L	A	R	V	R	A	R	A	P	T	L	W	F	L	V	.	P	G	I	G	A	Q	G	G	S	L
Template Known Secondary structure			S	S	G	G	G	G	G	T	T	T	S			T	T												T	T	T	T		T	T	S								.	.	.	.	.	.	T	T													S	S						.			S	S	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.																						.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		E	N	V	E	E	Q	L	S	I	A	D	G	.	.	.	.	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V	S	Q	F	M	E	K	V	H	H	I	R
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.										.	.	.					.	.
Template Conservation																											.	.	.					.	.
Template Sequence		K	A	S	L	D	A	G	L	R	A	D	G	S	G	M	L	I	N	V	S	R	G	L	A	R	.	.	.	A	A	D	P	.	.	R	A	A	A	K	E	L	C	E	E	I	N	A	I	R
Template Known Secondary structure											T	T	S								S					S	.	.	.		S			.	.
Template Predicted Secondary structure																											.	.	.					.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions