Job Description P39364 Confidence 60.51% Date Thu Jan 5 11:59:55 GMT 2012 Rank 323 Aligned Residues 215 % Identity 17% Template c3noeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa Resolution 2.95 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L
Query Conservation
Alig confidence																								.	.	.	.															.	.																													.
Template Conservation																								.	.	.	.															.	.																													.
Template Sequence		M	V	A	L	V	T	P	F	D	A	Q	G	R	L	D	W	D	S	L	A	K	L	.	.	.	.	V	D	F	H	L	Q	D	G	T	N	A	I	V	A	.	.	V	G	T	T	G	E	S	A	T	L	D	V	E	E	H	I	Q	V	V	R	R	V	V	D	Q	V	K	G	.	R	I	P	V	I	A	G	T	G
Template Known Secondary structure									B		T	T	S		B									.	.	.	.								T		S					.	.	S	S	T	T	T	T	G	G	G																		T	T	.	S	S
Template Predicted Secondary structure																								.	.	.	.															.	.																													.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.
		100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure			.																																															.						.
Query SS confidence			.																																															.						.
Query Sequence		W	.	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	.	G	A	G	E	V	.	K	T	L	F	N	I	V	P	E	A	A	V	Y	L	G	N	R	D	I	C	S	I	A	K	S
Query Conservation			.																																															.						.
Alig confidence			.														.	.	.	.																														.						.
Template Conservation																	.	.	.	.
Template Sequence		A	N	S	T	R	E	A	V	A	L	T	E	A	A	K	.	.	.	.	S	G	G	A	D	A	C	L	L	V	T	P	Y	Y	N	K	P	T	Q	E	G	M	Y	Q	H	F	R	H	I	A	E	A	V	A	I	P	Q	I	L	Y	N	V	P	G	R	T	S	C	D	M	L	P	E	T	V	E	R	L	S	K	V
Template Known Secondary structure			S	S													.	.	.	.	T	T	T		S									S	S																		S		S												S													T	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	C	L	E	N	V	E	E	Q	L	S	I	A	D	G	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.																	.																													.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.																	.																													.	.	.	.	.	.	.	.	.
Template Sequence		P	N	I	I	G	I	K	E	A	.	.	.	.	.	.	.	.	.	.	T	G	D	L	Q	R	A	K	E	V	I	E	R	V	G	K	.	D	F	L	V	Y	S	G	D	D	A	T	A	V	E	L	M	L	L	G	G	K	G	N	I	S	V	T	A	.	.	.	.	.	.	.	.	.	N	V	A	P	R	A	M
Template Known Secondary structure		T	T								.	.	.	.	.	.	.	.	.	.	S													S		T	.	T	S							T	T	T							T	T							S	G	G	.	.	.	.	.	.	.	.	.	G	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																	.																													.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.											.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.										.	.	210	.	.	.	.
		257	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	F	M	E	K	V	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	L	C	A	A	A	M	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions