Job Description P39364 Confidence 100.00% Date Thu Jan 5 11:59:55 GMT 2012 Rank 2 Aligned Residues 241 % Identity 13% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure											.	.	.	.	.																																									.	.	.	.
Query SS confidence											.	.	.	.	.																																									.	.	.	.
Query Sequence		M	S	W	L	K	E	V	I	G	.	.	.	.	.	T	E	K	A	V	I	A	M	C	H	L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	.	.	.	.	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V
Query Conservation											.	.	.	.	.																																									.	.	.	.
Alig confidence											.	.	.	.	.										.	.	.	.																												.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		M	N	R	Y	Q	A	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	.	.	.	.	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T
Template Known Secondary structure																T	B								.	.	.	.		T	T	S	S															T	T		S	S										T	T																T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	T	T	A	A	M	A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V
Query Conservation
Alig confidence																.	.																						.	.	.	.	.								.	.	.
Template Conservation																.	.																						.	.	.	.	.								.	.	.
Template Sequence		T	P	D	I	C	F	E	L	I	A	Q	I	R	A	.	.	R	N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	.	.	.	.	.	D	D	F	Y	Q	R	C	.	.	.	Q	K	A	G	V	D	S	V	L	I	A	D	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F
Template Known Secondary structure																.	.			T	T	S													T	T			.	.	.	.	.								.	.	.				T							T	T	S		G	G	G											T
Template Predicted Secondary structure																.	.																						.	.	.	.	.								.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																																				.
Query SS confidence																																				.																																				.
Query Sequence		K	T	L	F	N	I	V	P	E	A	A	V	Y	L	G	N	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	.	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	.	C	L	E	N	V	E	E	Q	L
Query Conservation																																				.																																				.
Alig confidence				.	.																															.					.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation				.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	.	.	Q	P	I	F	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	P	V	H	.	.	.	.	.	.	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	A	P	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I
Template Known Secondary structure		T		.	.								T	T			S												S												.	.	.	.	.	.	.	.	.	.	.									T	T								S	S			S
Template Predicted Secondary structure				.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.												.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		S	I	.	A	D	G	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V	S	Q	F	M	E	K	V	H	H	I	R	R
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A	M	K	K
Template Known Secondary structure			T	T		S					S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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