Job Description P39364 Confidence 57.76% Date Thu Jan 5 11:59:55 GMT 2012 Rank 332 Aligned Residues 218 % Identity 15% Template c3n2xB_ PDB info PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L
Query Conservation
Alig confidence																								.	.	.	.															.	.																													.
Template Conservation																								.	.	.	.															.	.																													.
Template Sequence		I	P	P	V	S	T	I	F	T	A	D	G	Q	L	D	K	P	G	T	A	A	L	.	.	.	.	I	D	D	L	I	K	A	G	V	D	G	L	F	F	.	.	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	.	R	V	P	V	L	I	G	T	G
Template Known Secondary structure				B					B		T	T	S		B									.	.	.	.							T	T		S					.	.	S	S	T	T	T	T	G	G	G	S																	T	T	.	S	S
Template Predicted Secondary structure																								.	.	.	.															.	.																													.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90
		100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure			.																																															.						.
Query SS confidence			.																																															.						.
Query Sequence		W	.	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	.	G	A	G	E	V	.	K	T	L	F	N	I	V	P	E	A	A	V	Y	L	G	N	R	D	I	C	S	I	A	K	S
Query Conservation			.																																															.						.
Alig confidence			.														.	.	.	.																														.						.
Template Conservation																	.	.	.	.
Template Sequence		G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	.	.	.	.	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	M	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S
Template Known Secondary structure		S	S														.	.	.	.			T		S								S	S	S																	T		S	S												S	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	C	L	E	N	V	E	E	Q	L	S	I	A	D	G	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.																		.																															.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																		.																															.	.	.	.	.	.	.	.	.
Template Sequence		R	S	N	I	I	G	I	D	T	.	.	.	.	.	.	.	I	D	S	V	A	H	L	R	S	M	I	H	T	V	K	G	A	.	H	P	H	F	T	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	.	.	.	.	.	.	.	.	.	N	F	A	P	Q	V	S
Template Known Secondary structure			T	T							.	.	.	.	.	.	.		S																.		T	T		B				S	S	G	G	G							T	T							G	G	G	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.																		.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	F	M	E	K	V	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	L	L	K	A	W	R	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions