|   |
46 | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | M | A | L | Q | N | G | G | V | D | A | V | M | F | S | N | E | F | S | L | P | Y | L | T | K | V | R | P | E | T | T | A | A | M | A | R | I | I | G | Q | L | M | S | D | I | R | I | P | F | G | V | N | V | L | W | D | P | V | A | S | F | D | L | A | M | A | T | G | A | K | F | I | R | E | I | F | T | G | A | Y |
Query Conservation |   |
|   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|   |   |
|   |
|   |
|   |   |   |   |
|
|   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
| . | . | . | . | . | . |   |   |
Template Sequence |   |
A | V | G | M | A | R | L | G | G | I | G | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
I | H | K | N | M | D | M | E | S | Q | V | N | E | . |
. |
. |
V | L | K | V | K | N | S | G | G | L | R | V | G | A | A | I | G | V | N | E | I | E | R | A | K | L | L | V | E | A | G | V | D | V | I | . |
. |
. |
. |
. |
. |
V | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | S |  |  |  | . | . | . | . | . | . | . | . | . |  |
| S | S | S |
|  |  |  |  |  |  |  | . | . | . |  |  |  |  |  | S | S | S |
|
|
|
|  |  |  |  |
| S | S |
| S |  |  |  |  |  |  |  |  |  | T |
| S |  |  | . | . | . | . | . | . |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
59 | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 120 |
  |
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
Query Sequence |   |
A | S | D | F | G | V | W | D | T | N | V | G | E | T | I | R | H | Q | H | R | I | G | A | G | E | V | K | T | L | F | N | I | V | P | E | A | A | V | Y | L | G | N | R | D | I | C | S | I | A | K | S | T | V | F | N | N | H | P | D | A | L | C | V | S | G | L | T | A | G | T | R | . |
. |
. |
. |
. |
. |
. |
T | D |
Query Conservation |   |
  |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |
|
|   |
|   |   |   |   |   |
|
|
|   |   |
|
|   |   | . | . | . | . | . | . | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |
|
|
|
|
|   |
|   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . |   |
|
|
|   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|
Template Sequence |   |
D | S | A | H | G | H | S | L | N | I | I | R | T | L | K | E | I | K | S | K | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
N | I | D | V | I | V | G | N | V | V | T | E | E | A | T | K | E | L | I | E | . |
. |
. |
. |
. |
N | G | A | D | G | I | K | V | G | I | G | P | C | T | T | R | I | V | A | G | V | G | V | P | Q |
Template Known Secondary structure |   |
|
| S | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
| S |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T | T |
| S |  |  |  |  |
| S |
|
|
|
|  |  |  |  | T |
|
|
|
|
|  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | |
|
. | . | . | . | . | . | . | . | . | 220 | |
. | . | . | . | . | . | . | . | . | 230 | . | |
. | . | . | . | . | . | . | . | 240 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 250 | . | . | . | . | . | |
. | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|  |  |  | . |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Query Sequence |   |
S | A | L | L | K | R | V | K | E | T | V | P | . |
. |
D | T | V | V | L | A | N | T | G | V | . |
C | L | E | N | V | E | E | Q | L | S | I | . |
A | D | G | C | V | T | A | T | T | F | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | D | G | V | F | A | N | F | V | D | Q | A | R | . |
V | S |
Query Conservation |   |
  |   |   |
|   |   |   |   |
|   |   |   | . | . |   |   |
|
|   |
|
|
|
|
| . |
|   |
|
|
|   |   |   |   |   |   | . |
|
|
|
|
|
|
|
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |
|   |
|
| . |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
Template Sequence |   |
I | T | A | I | E | K | C | S | S | V | A | S | K | F | G | I | P | I | I | A | D | G | G | I | R | Y | S | G | D | I | G | K | A | L | A | V | G | A | S | S | V | M | I | G | S | I | L | A | G | T | E | E | S | P | G | E | K | E | L | I | G | D | T | V | Y | K | Y | R | V | K | Y | K | G | E | M | E | G | V | V | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
| T | T | T | T | T | B | T | T | S | S | S |
|  |  |  |  | T | T |  |  |  |  |
|
|  |  |
|
| B |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
232 | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . |
  |
  |   |
258 | . | 260 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | F | M | E | K | V | H | H |
Query Conservation |   |
  |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
Template Sequence |   |
Q | L | V | G | G | L | R | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
347 | . | . | 350 | . | . | . | . |
  |