Job Description P39364 Confidence 97.46% Date Thu Jan 5 11:59:55 GMT 2012 Rank 101 Aligned Residues 151 % Identity 15% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.	.	.	.												.						.	.	.	.																				.
Query SS confidence																	.	.	.	.												.						.	.	.	.																				.
Query Sequence		P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	.	.	.	.	L	A	M	A	T	G	A	K	F	I	R	.	E	I	F	T	G	.	.	.	.	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	.	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P	E	A	A
Query Conservation																	.	.	.	.												.						.	.	.	.																				.
Alig confidence																	.	.	.	.												.						.	.	.	.																				.
Template Conservation
Template Sequence		P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E
Template Known Secondary structure		S								S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.												.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		V	Y	L	G	N	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	.	.	.	.	.	.	.	.	.	.	.	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	.	C	L	E	N	V	E	E	Q	L	S
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence																					.														.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																					.
Template Sequence		G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	.	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K
Template Known Secondary structure		T																	T	T	.									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									T
Template Predicted Secondary structure																					.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	D	G	C	V	T	A	T	T	F	K	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	D	G	V	X	L	G	R	A	V	Y	E	D
Template Known Secondary structure		T	S	S					S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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