Job Description P39364 Confidence 60.03% Date Thu Jan 5 11:59:55 GMT 2012 Rank 326 Aligned Residues 208 % Identity 10% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	.	D	P	V	A
Query Conservation																																																																													.
Alig confidence																		.	.	.	.															.	.																													.											.
Template Conservation																		.	.	.	.															.	.																													.
Template Sequence		T	P	F	K	N	K	E	V	D	F	D	G	L	E	E	N	.	.	.	.	I	N	F	L	I	E	N	G	V	S	G	I	V	A	.	.	V	G	T	T	G	E	S	P	T	L	S	H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	.	R	V	Q	V	I	A	G	A	G	S	N	C	T	E	E
Template Known Secondary structure						T	T											.	.	.	.							T	T		S					.	.	S	S	T	T	T	T	G	G	G	S																	T	T	.	S	S									S	S
Template Predicted Secondary structure																		.	.	.	.															.	.																													.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P	E	.	A	A	V	Y	L	G	N	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P
Query Conservation																																																										.
Alig confidence																				.	.	.																																				.
Template Conservation																				.	.	.
Template Sequence		A	I	E	L	S	V	F	A	E	D	V	G	A	D	A	V	L	S	.	.	.	I	T	P	Y	Y	N	K	P	T	Q	E	G	L	R	K	H	F	G	K	V	A	E	S	I	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L	E	P	K	T	V	K	L	L	A	E	E	Y	S	N	I	S	A	V
Template Known Secondary structure													T		S					.	.	.					S	S																			S	S												S																T	T
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	C	L	E	N	V	E	E	Q	L	S	I	.	A	D	G	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V	S	Q	F	M	E	K
Query Conservation																																																		.
Alig confidence				.	.	.	.	.	.	.	.	.															.											.	.	.										.										.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.															.											.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		K	E	.	.	.	.	.	.	.	.	.	A	N	P	N	L	S	Q	V	S	E	L	I	H	D	.	A	K	I	T	V	L	S	G	N	D	.	.	.	E	L	T	L	P	I	I	A	L	G	G	K	G	V	I	S	V	V	A	.	.	.	.	.	.	.	.	.	N	I	V	P	K	E	F	V	E	M	V	N	Y
Template Known Secondary structure				.	.	.	.	.	.	.	.	.			S												.	T							S	S	G	.	.	.	G	G								T							S	G	G	.	.	.	.	.	.	.	.	.	G	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.															.											.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.										.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.
		263	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		219	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions