Job Description P39364 Confidence 96.20% Date Thu Jan 5 11:59:55 GMT 2012 Rank 139 Aligned Residues 186 % Identity 21% Template c2nv2U_ PDB info PDB header:lyase/transferase Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs; PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis Resolution 2.12 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	.	.	.	.	.	.	.	A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		A	E	Q	A	K	I	A	E	E	A	G	A	V	A	V	M	A	.	.	.	.	.	.	.	.	L	E	R	V	P	A	D	I	R	A	A	G	G	V	A	R	M	A	D	P	T	I	V	E	E	V	M	N	A	V	S	I	P	V	M	A	K	A	R	I	G	H	I	V	E	A	R	V	L	E	A	M	G	V	D
Template Known Secondary structure											T	T		S					.	.	.	.	.	.	.	.		S	S									T																			S	S								T	T											T	T		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P	E	A	A	V	Y	L	G	N	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T
Query Conservation
Alig confidence							.	.								.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																					.	.	.	.	.	.	.
Template Conservation							.	.								.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		Y	I	D	E	S	.	.	E	V	L	T	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	E	E	F	H	L	N	K	N	E	Y	.	.	.	.	T	V	P	F	V	C	G	C	R	D	L	G	E	A	T	R	R	I	A	E	.	.	.	.	.	.	.	G	A	S	M	L	R	T	K	G	E	P	G	T
Template Known Secondary structure							.	.	T	T	S			S		.	.	.	.	.	.	.	.	.	.	.	.	S	S					G	G	G		.	.	.	.	S	S							S	S										T	.	.	.	.	.	.	.	T		S								T	T	S
Template Predicted Secondary structure							.	.								.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.			.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.
		196	.	.	.	200																																			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220		.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.			.												.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.			.												.
Query Sequence		R	T	D	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	.	.	G	V	.	C	L	E	N	V	E	E	Q	L	S	I	.	A	D	G	C	V	T
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.			.												.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.			.												.
Template Conservation
Template Sequence		G	N	I	V	E	A	V	R	H	M	R	K	V	N	A	Q	V	R	K	V	V	A	M	S	E	D	E	L	M	T	E	A	K	N	L	G	A	P	Y	E	L	L	L	Q	I	K	K	D	G	K	L	P	V	V	N	F	A	A	G	G	V	A	T	P	A	D	A	A	L	M	M	Q	L	G	A	D	G	V	F	V
Template Known Secondary structure				T																				S		G	G	G									T													T	S		S	S				B		S				S										T	T		S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V	S	Q	F	M	E	K	V	H	H	I
Query Conservation
Alig confidence								.	.	.					.	.
Template Conservation								.	.	.					.	.
Template Sequence		G	S	G	I	F	K	.	.	.	S	D	N	P	.	.	A	K	F	A	K	A	I	V	E	A	T	T	H	F
Template Known Secondary structure			T					.	.	.	S	S			.	.													T	T
Template Predicted Secondary structure								.	.	.					.	.
Template SS confidence
		235	.	.	.	.	240				.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions