Job Description P39364 Confidence 95.62% Date Thu Jan 5 11:59:55 GMT 2012 Rank 155 Aligned Residues 195 % Identity 18% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		E	K	A	V	I	A	M	C	H	L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	S	.	.	.	.	.	.	.	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M	A	R	I	I
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																.	.	.	.	.	.	.																				.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																																										.	.	.
Template Sequence		D	N	I	V	I	A	S	I	.	.	.	.	.	.	.	.	.	.	.	M	C	S	Y	N	K	N	D	W	M	E	L	.	.	.	.	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	.	.	.	C
Template Known Secondary structure		T	S							.	.	.	.	.	.	.	.	.	.	.				S									.	.	.	.							T	T		S										S	S	G	G	G	G	T		T														.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																																										.	.	.
Template SS confidence
		634	.	.	.	.	.	640	.												.	.	.	.	.	.	.	.	650	.	.	.					.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.				.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P	E	A	A	V
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	N	V	T	D	I	V	S	I	A	R	A	A	K	E	.	.	.	.	.	.	.	.	.	.	.	G	G	A	D	G	V	T	A	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	S	G	L	M	G	L	K	A	D	G	T	P
Template Known Secondary structure									S	S								S		S	S												.	.	.	.	.	.	.	.	.	.	.		T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.								B		T	T	S		B
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.												.	.	.	730	.	.	.	.	.	.															.	.	.	740	.	.	.	.	.	.	.	.	.	750
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																											.												.
Query SS confidence																																																											.												.
Query Sequence		Y	L	G	N	R	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	P	D	T	V	V	L	A	N	T	G	V	.	C	L	E	N	V	E	E	Q	L	S	I	.	A	D	G	C	V	T	A	T	T	F
Query Conservation																																																											.												.
Alig confidence									.	.	.	.	.	.	.	.	.	.														.																											.												.
Template Conservation									.	.	.	.	.	.	.	.	.	.														.
Template Sequence		W	P	A	V	G	A	G	.	.	.	.	.	.	.	.	.	.	K	R	T	T	Y	G	G	V	S	G	T	A	I	.	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V
Template Known Secondary structure		S	S		B	T	T	T	.	.	.	.	.	.	.	.	.	.	T	B								S	G	G	G	.															S	T	T							S	S			S										T	T		S					S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		751	.	.	.	.	.	.											.	.	760	.	.	.	.	.	.	.	.	.	770		.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	D	G	V	F	A	N	F	V	D	Q	A	R	V	S	Q	F	M	E	K	V	H	H	I
Query Conservation
Alig confidence						.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.
Template Sequence		Q	N	Q	D	.	.	.	.	.	.	.	F	T	V	I	Q	D	Y	C	T	G	L	K	A	L
Template Known Secondary structure			T	S		.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.
Template SS confidence
		820	.	.	.								.	.	.	.	.	.	830	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions