Job Description P39364 Confidence 38.46% Date Thu Jan 5 11:59:55 GMT 2012 Rank 362 Aligned Residues 234 % Identity 12% Template c1gehE_ PDB info PDB header:lyase Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase; PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase) Resolution 2.80 Å

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		4	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																																			.	.	.
Query SS confidence								.																																																			.	.	.
Query Sequence		L	K	E	V	I	G	.	T	E	K	A	V	I	A	M	C	H	L	R	A	L	P	G	D	P	S	F	D	A	Q	L	G	M	N	W	V	I	D	K	A	W	D	D	L	M	A	L	Q	N	G	G	V	D	A	V	M	F	.	.	.	S	N	E	F	S	L	P	Y	L	T	K	V	R	P	E	T	T	A	A	M
Query Conservation								.																																																			.	.	.
Alig confidence								.										.	.	.	.	.	.	.	.																.	.	.	.											.	.			.	.	.										.	.
Template Conservation																		.	.	.	.	.	.	.	.																.	.	.	.											.	.															.	.
Template Sequence		V	R	K	M	L	E	I	K	D	R	P	I	Y	G	V	V	.	.	.	.	.	.	.	.	P	K	P	K	V	G	Y	S	P	E	E	F	E	K	L	.	.	.	.	A	Y	D	L	L	S	N	G	A	D	.	.	Y	M	K	D	D	E	N	L	T	S	P	W	Y	N	.	.	R	F	E	E	R	A	E	I	M
Template Known Secondary structure							T			S	S							.	.	.	.	.	.	.	.		S	S		S	S										.	.	.	.							T	T			.	.						T	T					T	T	S	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																.	.	.	.											.	.															.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	I	I	G	Q	L	M	S	D	I	R	I	P	F	G	V	N	V	L	W	D	P	V	A	S	F	D	L	A	M	A	T	G	A	K	F	I	R	E	I	F	T	G	A	Y	A	S	D	F	G	V	W	D	T	N	V	G	E	T	I	R	H	Q	H	R	I	G	A	G	E	V	K	T	L	F	N	I	V	P
Query Conservation
Alig confidence																																	.	.	.								.	.
Template Conservation																																	.	.	.								.	.
Template Sequence		A	K	I	I	D	K	V	E	N	E	T	G	E	K	K	T	W	F	A	N	I	T	A	D	L	L	E	M	E	Q	R	.	.	.	L	E	V	L	A	D	L	.	.	G	L	K	H	A	M	V	D	V	V	I	T	G	W	G	A	L	R	Y	I	R	D	L	A	A	D	Y	G	L	A	I	H	G	H	R	A	M
Template Known Secondary structure												T		S							B			S	S								.	.	.								.	.	T																										T	T								T	T
Template Predicted Secondary structure																																	.	.	.								.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																				210	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	A	V	Y	L	G	N	R	.	.	.	.	.	.	D	I	C	S	I	A	K	S	T	V	F	N	N	H	P	D	A	L	C	V	S	G	L	T	A	G	T	R	T	D	S	A	L	L	K	R	V	K	E	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	T	V	V
Query Conservation											.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.											.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		H	A	A	F	T	R	N	P	Y	H	G	I	S	M	F	V	L	A	K	L	Y	R	L	I	G	.	.	.	.	I	D	Q	L	H	V	G	T	A	E	G	G	K	W	D	V	I	Q	N	A	R	I	L	R	E	S	H	Y	K	P	D	E	N	D	V	F	H	L	E	Q	K	F	Y	S	I	K	A	A	F	P	T
Template Known Secondary structure		T					S		T	T	S															T	.	.	.	.		S									T															S						T	T			S							T	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.			.																							.
Query SS confidence																			.	.			.																							.
Query Sequence		L	A	N	T	G	V	C	L	E	N	V	E	E	Q	L	S	I	.	.	A	D	.	G	C	V	T	A	T	T	F	K	K	D	G	V	F	A	N	F	V	D	Q	A	R	.	V	S	Q	F	M	E	K	V	H	H	I	R	R
Query Conservation																			.	.			.																							.
Alig confidence			.																.	.			.												.	.	.	.	.							.
Template Conservation			.																																.	.	.	.	.
Template Sequence		S	.	S	G	G	L	H	P	G	N	I	Q	P	V	I	E	A	L	G	T	D	I	V	L	Q	L	G	G	G	T	L	G	H	.	.	.	.	.	P	D	G	P	A	A	G	A	R	A	V	R	Q	A	I	D	A	I	M	Q
Template Known Secondary structure			.		S	S			T	T	T								T		S	S	S					S					S		.	.	.	.	.	T	T																	T	S
Template Predicted Secondary structure			.																																.	.	.	.	.
Template SS confidence
		366		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.						.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions